PH01007418G0030's details annotation
1.Annotation
ICBR annotation: SET domain protein SDG117, putative, expressed
Blast result AT2G23740 : 0.00E+00
Blast annotation: nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding
2.Location
Scaffold: PH01007418
Strand: +
| Region | Start | End |
| gene | 17971 | 23952 |
| mRNA | 17971 | 23952 |
| exon | 17971 | 21454 |
| exon | 21604 | 21765 |
| exon | 22770 | 22886 |
| exon | 22996 | 23099 |
| exon | 23652 | 23739 |
| exon | 23833 | 23952 |
| CDS | 18740 | 21454 |
| CDS | 21604 | 21765 |
| CDS | 22770 | 22886 |
| CDS | 22996 | 23099 |
| CDS | 23652 | 23739 |
| CDS | 23833 | 23940 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001543 | SET Transcription_Regulator(from iTAK) histone_lysine_methylation histone-lysine N-methyltransferase activity, Lysine_degradation protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, histone_methylation (1->3)-beta-D-glucan biosynthetic process, cellular protein modification process, histone_binding 1,3-beta-D-glucan synthase complex, nucleus, 1,3-beta-D-glucan synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11722.7 | zf-TRM13_CCCH | 141 | 168 |
| PF05033.15 | Pre-SET | 851 | 980 |
| PF00856.27 | SET | 1033 | 1073 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0008270 | zinc ion binding |
| GO:0018024 | histone-lysine N-methyltransferase activity |
| GO:0034968 | histone lysine methylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.