PH01007546G0020's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat domain containing protein, expressed
Blast result AT5G65520 : 8.70E-29
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01007546
Strand: +
| Region | Start | End |
| gene | 8758 | 9776 |
| mRNA | 8758 | 9776 |
| exon | 8758 | 9062 |
| exon | 9154 | 9776 |
| CDS | 8976 | 9062 |
| CDS | 9154 | 9672 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14559.5 | TPR_19 | 126 | 183 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.