PH01007612G0010's details annotation
1.Annotation
ICBR annotation: auxin response factor 7, putative, expressed
Blast result AT1G59750 : 0.00E+00
Blast annotation: auxin response factor 1
2.Location
Scaffold: PH01007612
Strand: -
| Region | Start | End |
| gene | 5816 | 12450 |
| mRNA | 5816 | 12450 |
| exon | 5816 | 7624 |
| exon | 7713 | 7903 |
| exon | 7999 | 8474 |
| exon | 8620 | 8788 |
| exon | 8941 | 9016 |
| exon | 9108 | 9227 |
| exon | 9598 | 9762 |
| exon | 9882 | 9972 |
| exon | 10142 | 10226 |
| exon | 10328 | 10480 |
| exon | 10665 | 10721 |
| exon | 10840 | 10935 |
| exon | 11144 | 11259 |
| exon | 12027 | 12450 |
| CDS | 7432 | 7624 |
| CDS | 7713 | 7903 |
| CDS | 7999 | 8474 |
| CDS | 8620 | 8788 |
| CDS | 8941 | 9016 |
| CDS | 9108 | 9227 |
| CDS | 9598 | 9762 |
| CDS | 9882 | 9972 |
| CDS | 10142 | 10226 |
| CDS | 10328 | 10480 |
| CDS | 10665 | 10721 |
| CDS | 10840 | 10935 |
| CDS | 11144 | 11259 |
| CDS | 12027 | 12057 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 122 | 222 |
| PF06507.12 | Auxin_resp | 248 | 330 |
| PF02309.15 | AUX_IAA | 531 | 577 |
| PF02309.15 | AUX_IAA | 588 | 632 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | auxin response factor | ko04075 | K14486 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.