PH01007660G0010's details annotation
1.Annotation
ICBR annotation: calmodulin binding protein, putative, expressed
Blast result AT5G57580 : 8.90E-27
Blast annotation: Calmodulin-binding protein
2.Location
Scaffold: PH01007660
Strand: +
| Region | Start | End |
| gene | 4656 | 11407 |
| mRNA | 4656 | 11407 |
| exon | 4656 | 4856 |
| exon | 4954 | 5011 |
| exon | 5129 | 5265 |
| exon | 5662 | 5713 |
| exon | 5803 | 5855 |
| exon | 6076 | 6557 |
| exon | 7193 | 7353 |
| exon | 8440 | 8637 |
| exon | 9708 | 9900 |
| exon | 9972 | 10109 |
| exon | 10198 | 10319 |
| exon | 10458 | 10536 |
| exon | 10670 | 10743 |
| exon | 10908 | 10977 |
| exon | 11280 | 11407 |
| CDS | 4750 | 4856 |
| CDS | 4954 | 5011 |
| CDS | 5129 | 5265 |
| CDS | 5662 | 5713 |
| CDS | 5803 | 5855 |
| CDS | 6076 | 6557 |
| CDS | 7193 | 7353 |
| CDS | 8440 | 8637 |
| CDS | 9708 | 9900 |
| CDS | 9972 | 10109 |
| CDS | 10198 | 10319 |
| CDS | 10458 | 10536 |
| CDS | 10670 | 10743 |
| CDS | 10908 | 10977 |
| CDS | 11280 | 11359 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07887.10 | Calmodulin_bind | 153 | 435 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.