PH01007960G0010's details annotation
1.Annotation
ICBR annotation: sucrose synthase, putative, expressed
Blast result AT4G02280 : 8.30E-82
Blast annotation: sucrose synthase 3
2.Location
Scaffold: PH01007960
Strand: -
| Region | Start | End |
| gene | 9 | 4177 |
| mRNA | 9 | 4177 |
| exon | 9 | 344 |
| exon | 439 | 631 |
| exon | 1379 | 1530 |
| exon | 1620 | 1746 |
| exon | 3369 | 4177 |
| CDS | 222 | 344 |
| CDS | 439 | 631 |
| CDS | 1379 | 1530 |
| CDS | 1620 | 1746 |
| CDS | 3369 | 3427 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00862.18 | Sucrose_synth | 17 | 216 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005985 | sucrose metabolic process |
| GO:0016157 | sucrose synthase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.