PH01008287G0010's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G76880 : 3.30E-87
Blast annotation: Duplicated homeodomain-like superfamily protein
2.Location
Scaffold: PH01008287
Strand: -
| Region | Start | End |
| gene | 1698 | 5966 |
| mRNA | 1698 | 5966 |
| exon | 1698 | 2961 |
| exon | 3055 | 4357 |
| exon | 5104 | 5966 |
| CDS | 2704 | 2961 |
| CDS | 3055 | 4357 |
| CDS | 5104 | 5468 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000644 | NAC Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent, Trihelix Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Trihelix |
| Transcription_Regulator(from PlantTFDB) | Trihelix |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13837.5 | Myb_DNA-bind_4 | 86 | 172 |
| PF13837.5 | Myb_DNA-bind_4 | 391 | 478 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.