PH01008356G0010's details annotation
1.Annotation
ICBR annotation: vignain precursor, putative
Blast result AT5G45890 : 9.20E-53
Blast annotation: senescence-associated gene 12
2.Location
Scaffold: PH01008356
Strand: -
| Region | Start | End |
| gene | 620 | 1951 |
| mRNA | 620 | 1951 |
| exon | 620 | 935 |
| exon | 1095 | 1381 |
| exon | 1465 | 1750 |
| exon | 1875 | 1951 |
| CDS | 822 | 935 |
| CDS | 1095 | 1381 |
| CDS | 1465 | 1750 |
| CDS | 1875 | 1895 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08246.11 | Inhibitor_I29 | 10 | 51 |
| PF00112.22 | Peptidase_C1 | 81 | 198 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008234 | cysteine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.