PH01008362G0020's details annotation
1.Annotation
ICBR annotation: serine palmitoyltransferase 2, putative, expressed
Blast result AT5G23670 : 7.10E-75
Blast annotation: long chain base2
2.Location
Scaffold: PH01008362
Strand: +
| Region | Start | End |
| gene | 4533 | 9266 |
| mRNA | 4533 | 9266 |
| exon | 4533 | 6269 |
| exon | 6365 | 6430 |
| exon | 7760 | 7886 |
| exon | 7996 | 8162 |
| exon | 8310 | 8417 |
| exon | 8517 | 8605 |
| exon | 8921 | 9266 |
| CDS | 6144 | 6269 |
| CDS | 6365 | 6430 |
| CDS | 7760 | 7886 |
| CDS | 7996 | 8162 |
| CDS | 8310 | 8417 |
| CDS | 8517 | 8605 |
| CDS | 8921 | 9140 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00155.20 | Aminotran_1_2 | 65 | 200 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0009058 | biosynthetic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.