PH01008425G0020's details annotation
1.Annotation
ICBR annotation: vacuolar-sorting receptor precursor, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01008425
Strand: +
| Region | Start | End |
| gene | 6725 | 10317 |
| mRNA | 6725 | 10317 |
| exon | 6725 | 7141 |
| exon | 8024 | 8142 |
| exon | 8467 | 8519 |
| exon | 8596 | 8601 |
| exon | 8654 | 8708 |
| exon | 9985 | 10317 |
| CDS | 6963 | 7141 |
| CDS | 8024 | 8142 |
| CDS | 8467 | 8519 |
| CDS | 8596 | 8601 |
| CDS | 8654 | 8708 |
| CDS | 9985 | 10091 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000169 | peroxisomal membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated transcription_corepressor_activity Galactose_metabolism Peroxisome Pentose_and_glucuronate_interconversions Pyruvate_metabolism Glycerolipid_metabolism Fructose_and_mannose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.