PH01008466G0020's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G38440 : 2.40E-47
Blast annotation: SCAR homolog 2
2.Location
Scaffold: PH01008466
Strand: -
| Region | Start | End |
| gene | 5700 | 10463 |
| mRNA | 5700 | 10463 |
| exon | 5700 | 6074 |
| exon | 6163 | 6267 |
| exon | 6366 | 6449 |
| exon | 6543 | 6628 |
| exon | 6890 | 8898 |
| exon | 8988 | 9055 |
| exon | 9401 | 9524 |
| exon | 9610 | 9736 |
| exon | 9845 | 10008 |
| exon | 10104 | 10463 |
| CDS | 6018 | 6074 |
| CDS | 6163 | 6267 |
| CDS | 6366 | 6449 |
| CDS | 6543 | 6628 |
| CDS | 6890 | 8898 |
| CDS | 8988 | 9055 |
| CDS | 9401 | 9524 |
| CDS | 9610 | 9736 |
| CDS | 9845 | 10008 |
| CDS | 10104 | 10261 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.