PH01008584G0010's details annotation
1.Annotation
ICBR annotation: OsFBT4 - F-box and tubby domain containing protein, expressed
Blast result AT1G47270 : 3.00E-117
Blast annotation: tubby like protein 6
2.Location
Scaffold: PH01008584
Strand: -
| Region | Start | End |
| gene | 7495 | 10464 |
| mRNA | 7495 | 10464 |
| exon | 7495 | 8453 |
| exon | 8555 | 8687 |
| exon | 9881 | 9968 |
| exon | 10081 | 10464 |
| CDS | 7772 | 8453 |
| CDS | 8555 | 8687 |
| CDS | 9881 | 9968 |
| CDS | 10081 | 10431 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 54 | 105 |
| PF01167.17 | Tub | 117 | 412 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.