PH01008618G0010's details annotation
1.Annotation
ICBR annotation: FHA domain containing protein, putative, expressed
Blast result AT5G38840 : 6.10E-76
Blast annotation: SMAD/FHA domain-containing protein
2.Location
Scaffold: PH01008618
Strand: +
| Region | Start | End |
| gene | 148 | 9325 |
| mRNA | 148 | 9325 |
| exon | 148 | 238 |
| exon | 551 | 624 |
| exon | 1623 | 1762 |
| exon | 1855 | 1985 |
| exon | 2326 | 2558 |
| exon | 7746 | 8537 |
| exon | 8621 | 9325 |
| CDS | 148 | 238 |
| CDS | 551 | 624 |
| CDS | 1623 | 1762 |
| CDS | 1855 | 1985 |
| CDS | 2326 | 2558 |
| CDS | 7746 | 8537 |
| CDS | 8621 | 8670 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001589 | PHD Transcription_Regulator(from iTAK) fructose-bisphosphate aldolase activity, glycolysis, |
| coexpression network | CFinderM001766 | proton-transporting ATP synthase complex, catalytic core F(1), mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting two-sector ATPase complex, catalytic domain, mitochondrial outer membrane, ATP metabolic process, anion transport, ATP biosynthetic process, ATP_catabolic_process regulation_of_anion_transport proton transport, ATP synthesis coupled proton transport, fructose-bisphosphate aldolase activity, voltage-gated anion channel activity, ATP hydrolysis coupled proton transport, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, hydrogen ion transporting ATP synthase activity, rotational mechanism, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.