Annotation of co-expression genes

PH01009032G0020's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase 5 precursor, putative, expressed

Blast result AT5G25930 : 0.00E+00
Blast annotation: Protein kinase family protein with leucine-rich repeat domain

2.Location

Scaffold: PH01009032
Strand: +

RegionStartEnd
gene747411102
mRNA747411102
exon747410048
exon1022410790
exon1087511102
CDS811610048
CDS1022410790
CDS1087511102

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000036intrinsic to endoplasmic reticulum membrane,
GT64 GlycosylTransferases
Alanine,_aspartate_and_glutamate_metabolism
Nicotinate_and_nicotinamide_metabolism
Sphingolipid_metabolism
transferase activity, transferring hexosyl groups,
RLK-Pelle_LRR-XI-1 (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_23269
PF13855.5LRR_881131
PF13855.5LRR_8220278
PF13855.5LRR_8291350
PF13855.5LRR_8503562
PF07714.16Pkinase_Tyr656861

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.