PH01010875G0010's details annotation
1.Annotation
ICBR annotation: cyclin-A1, putative, expressed
Blast result AT1G44110 : 4.10E-95
Blast annotation: Cyclin A1;1
2.Location
Scaffold: PH01010875
Strand: +
| Region | Start | End |
| gene | 2572 | 5952 |
| mRNA | 2572 | 5952 |
| exon | 2572 | 2931 |
| exon | 3743 | 4115 |
| exon | 4200 | 4333 |
| exon | 4805 | 4900 |
| exon | 5002 | 5135 |
| exon | 5348 | 5423 |
| exon | 5529 | 5605 |
| exon | 5688 | 5721 |
| exon | 5803 | 5952 |
| CDS | 2818 | 2931 |
| CDS | 3743 | 4115 |
| CDS | 4200 | 4333 |
| CDS | 4805 | 4900 |
| CDS | 5002 | 5135 |
| CDS | 5348 | 5423 |
| CDS | 5529 | 5605 |
| CDS | 5688 | 5721 |
| CDS | 5803 | 5952 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000527 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, regulation_of_cell_cycle aromatic amino acid family biosynthetic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
| coexpression network | CFinderM001592 | DNA_ligation_involved_in_DNA_repair DNA_ligase_activity DNA ligase (ATP) activity, regulation_of_cell_cycle DNA recombination, C3H Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity Mismatch_repair Base_excision_repair Nucleotide_excision_repair DNA_replication DNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 198 | 325 |
| PF02984.18 | Cyclin_C | 328 | 391 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0005634 | nucleus |
| GO:0019901 | protein kinase binding |
| GO:0051726 | regulation of cell cycle |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.