PH01013457G0010's details annotation
1.Annotation
ICBR annotation: nodulin MtN3 family protein, putative, expressed
Blast result AT3G48740 : 1.20E-78
Blast annotation: Nodulin MtN3 family protein
2.Location
Scaffold: PH01013457
Strand: -
| Region | Start | End |
| gene | 1700 | 3818 |
| mRNA | 1700 | 3818 |
| exon | 1700 | 2292 |
| exon | 2402 | 2521 |
| exon | 2632 | 3004 |
| exon | 3141 | 3177 |
| exon | 3767 | 3818 |
| CDS | 1993 | 2292 |
| CDS | 2402 | 2521 |
| CDS | 2632 | 3004 |
| CDS | 3141 | 3177 |
| CDS | 3767 | 3818 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000044 | integral to membrane, peptide-methionine_(R)-S-oxide_reductase_activity NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000335 | acid-amino acid ligase activity, peptide-methionine_(R)-S-oxide_reductase_activity Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03083.15 | MtN3_slv | 13 | 98 |
| PF03083.15 | MtN3_slv | 134 | 216 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.