PH01016682G0010's details annotation
1.Annotation
ICBR annotation: carotenoid cleavage dioxygenase, putative, expressed
Blast result AT3G63520 : 3.00E-66
Blast annotation: carotenoid cleavage dioxygenase 1
2.Location
Scaffold: PH01016682
Strand: +
| Region | Start | End |
| gene | 169 | 2806 |
| mRNA | 169 | 2806 |
| exon | 169 | 660 |
| exon | 1017 | 1291 |
| exon | 1651 | 1675 |
| exon | 1831 | 1941 |
| exon | 2026 | 2210 |
| exon | 2668 | 2806 |
| CDS | 558 | 660 |
| CDS | 1017 | 1291 |
| CDS | 1651 | 1675 |
| CDS | 1831 | 1941 |
| CDS | 2026 | 2210 |
| CDS | 2668 | 2806 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03055.14 | RPE65 | 143 | 278 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.