PH01017400G0010's details annotation
1.Annotation
ICBR annotation: receptor-like protein kinase precursor, putative, expressed
Blast result AT3G47570 : 3.00E-67
Blast annotation: Leucine-rich repeat protein kinase family protein
2.Location
Scaffold: PH01017400
Strand: -
| Region | Start | End |
| gene | 41 | 2601 |
| mRNA | 41 | 2601 |
| exon | 41 | 928 |
| exon | 1327 | 2601 |
| CDS | 41 | 928 |
| CDS | 1327 | 2017 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000709 | ADP_binding defense response, RLK-Pelle_LRK10L-2 (from iTAK) tryptophanyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis tryptophan-tRNA ligase activity, cullin-RING ubiquitin ligase complex, regulation of ARF GTPase activity, |
| coexpression network | CFinderM000996 | ADP_binding defense response, tryptophanyl-tRNA aminoacylation, tryptophan-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 30 | 68 |
| PF00560.32 | LRR_1 | 123 | 144 |
| PF13855.5 | LRR_8 | 170 | 229 |
| PF13855.5 | LRR_8 | 272 | 332 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.