PH01020604G0010's details annotation
1.Annotation
ICBR annotation: cullin, putative, expressed
Blast result AT4G02570 : 2.00E-128
Blast annotation: cullin 1
2.Location
Scaffold: PH01020604
Strand: +
| Region | Start | End |
| gene | 230 | 2537 |
| mRNA | 230 | 2537 |
| exon | 230 | 319 |
| exon | 401 | 481 |
| exon | 569 | 631 |
| exon | 1299 | 1334 |
| exon | 1425 | 1511 |
| exon | 1617 | 1766 |
| exon | 1860 | 2204 |
| exon | 2394 | 2537 |
| CDS | 230 | 319 |
| CDS | 401 | 481 |
| CDS | 569 | 631 |
| CDS | 1299 | 1334 |
| CDS | 1425 | 1511 |
| CDS | 1617 | 1766 |
| CDS | 1860 | 2204 |
| CDS | 2394 | 2537 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00888.21 | Cullin | 2 | 182 |
| PF00888.21 | Cullin | 213 | 286 |
| PF00888.21 | Cullin | 286 | 332 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
| GO:0031461 | cullin-RING ubiquitin ligase complex |
| GO:0031625 | ubiquitin protein ligase binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.