PH01029174G0010's details annotation
1.Annotation
ICBR annotation: OsWRKY39v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed
Blast result AT5G52830 : 2.10E-43
Blast annotation: WRKY DNA-binding protein 27
2.Location
Scaffold: PH01029174
Strand: -
| Region | Start | End |
| gene | 974 | 2169 |
| mRNA | 974 | 2169 |
| exon | 974 | 1703 |
| exon | 1832 | 1945 |
| exon | 2060 | 2169 |
| CDS | 1166 | 1703 |
| CDS | 1832 | 1945 |
| CDS | 2060 | 2169 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000298 | WRKY Transcription_Regulator(from PlantTFDB) Rho guanyl-nucleotide exchange factor activity, sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, regulation of transcription, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | WRKY |
| Transcription_Regulator(from PlantTFDB) | WRKY |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03106.14 | WRKY | 56 | 112 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.