PH01033249G0010's details annotation
1.Annotation
ICBR annotation: protein binding protein, putative, expressed
Blast result AT3G14250 : 3.60E-57
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01033249
Strand: -
| Region | Start | End |
| gene | 502 | 1890 |
| mRNA | 502 | 1890 |
| exon | 502 | 1890 |
| CDS | 865 | 1743 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000551 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine biosynthetic process, Selenocompound_metabolism cellular amino acid biosynthetic process, Cysteine_and_methionine_metabolism zinc ion binding, |
| coexpression network | CFinderM000552 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00097.24 | zf-C3HC4 | 107 | 153 |
| PF01485.20 | IBR | 191 | 240 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.