PH01033884G0010's details annotation
1.Annotation
ICBR annotation: ribulose bisphosphate carboxylase large chain precursor, putative, expressed
Blast result ATCG00490 : 1.90E-85
Blast annotation: ribulose-bisphosphate carboxylases
2.Location
Scaffold: PH01033884
Strand: -
| Region | Start | End |
| gene | 715 | 1418 |
| mRNA | 715 | 1418 |
| exon | 715 | 1418 |
| CDS | 747 | 1271 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000808 | RLK-Pelle_LRR-Xa (from iTAK) peroxisomal membrane, membrane, SBP Transcription_Regulator(from PlantTFDB) protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated ATPase activity, transcription_corepressor_activity nucleoside-triphosphatase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00016.19 | RuBisCO_large | 3 | 153 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.