PH01040200G0010's details annotation
1.Annotation
ICBR annotation: Dicer, putative, expressed
Blast result AT1G01040 : 5.00E-118
Blast annotation: dicer-like 1
2.Location
Scaffold: PH01040200
Strand: +
| Region | Start | End |
| gene | 146 | 1687 |
| mRNA | 146 | 1687 |
| exon | 146 | 379 |
| exon | 465 | 615 |
| exon | 997 | 1176 |
| exon | 1331 | 1492 |
| exon | 1568 | 1687 |
| CDS | 146 | 379 |
| CDS | 465 | 615 |
| CDS | 997 | 1176 |
| CDS | 1331 | 1492 |
| CDS | 1568 | 1687 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03368.13 | Dicer_dimer | 63 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.