PH01045261G0010's details annotation
1.Annotation
ICBR annotation: SCC3, putative, expressed
Blast result AT2G47980 : 3.30E-26
Blast annotation: sister-chromatid cohesion protein 3
2.Location
Scaffold: PH01045261
Strand: -
| Region | Start | End |
| gene | 4 | 1642 |
| mRNA | 4 | 1642 |
| exon | 4 | 574 |
| exon | 708 | 852 |
| exon | 1257 | 1337 |
| exon | 1478 | 1642 |
| CDS | 366 | 574 |
| CDS | 708 | 852 |
| CDS | 1257 | 1337 |
| CDS | 1478 | 1642 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000104 | |
| coexpression network | CFinderM000444 | cysteine-type endopeptidase inhibitor activity, N,N-dimethylaniline monooxygenase activity, NADP binding, |
| coexpression network | CFinderM000983 | Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.