PH01078855G0010's details annotation
1.Annotation
ICBR annotation: armadillo, putative, expressed
Blast result AT5G50900 : 4.50E-37
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01078855
Strand: +
| Region | Start | End |
| gene | 46 | 1144 |
| mRNA | 46 | 1144 |
| exon | 46 | 219 |
| exon | 416 | 1144 |
| CDS | 46 | 219 |
| CDS | 416 | 1144 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000512 | GH35 Glycoside_Hydrolases MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001601 | GH35 Glycoside_Hydrolases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.