PH01083427G0010's details annotation
1.Annotation
ICBR annotation: transketolase, putative, expressed
Blast result AT4G15560 : 1.60E-79
Blast annotation: Deoxyxylulose-5-phosphate synthase
2.Location
Scaffold: PH01083427
Strand: +
| Region | Start | End |
| gene | 339 | 1172 |
| mRNA | 339 | 1172 |
| exon | 339 | 512 |
| exon | 613 | 1172 |
| CDS | 339 | 512 |
| CDS | 613 | 1172 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13292.5 | DXP_synthase_N | 43 | 242 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity |
| GO:0016114 | terpenoid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.