PH01128416G0010's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G02460 : 6.10E-59
Blast annotation: DNA mismatch repair protein, putative
2.Location
Scaffold: PH01128416
Strand: +
| Region | Start | End |
| gene | 42 | 842 |
| mRNA | 42 | 842 |
| exon | 42 | 842 |
| CDS | 42 | 842 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01119.18 | DNA_mis_repair | 39 | 157 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Mismatch repair | DNA mismatch repair protein PMS2 | ko03430 | K10858 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006298 | mismatch repair |
| GO:0030983 | mismatched DNA binding |
| GO:0032389 | MutLalpha complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.