PH01132542G0010's details annotation
1.Annotation
ICBR annotation: stromal cell-derived factor 2-like protein precursor, putative, expressed
Blast result AT2G25110 : 2.50E-25
Blast annotation: stromal cell-derived factor 2-like protein precursor
2.Location
Scaffold: PH01132542
Strand: +
| Region | Start | End |
| gene | 683 | 957 |
| mRNA | 683 | 957 |
| exon | 683 | 732 |
| exon | 828 | 957 |
| CDS | 683 | 732 |
| CDS | 828 | 957 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001164 | membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02815.18 | MIR | 16 | 50 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.