PH01163881G0010's details annotation
1.Annotation
ICBR annotation: cupin domain containing protein, expressed
Blast result AT5G39150 : 6.40E-65
Blast annotation: RmlC-like cupins superfamily protein
2.Location
Scaffold: PH01163881
Strand: +
| Region | Start | End |
| gene | 77 | 629 |
| mRNA | 77 | 629 |
| exon | 77 | 629 |
| CDS | 77 | 627 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000634 | fatty acid metabolic process, lipid transport, lipid binding, transition metal ion binding, acyl-[acyl-carrier-protein] desaturase activity, manganese ion binding, nutrient reservoir activity, apoplast, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00190.21 | Cupin_1 | 64 | 211 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030145 | manganese ion binding |
| GO:0045735 | nutrient reservoir activity |
| GO:0048046 | apoplast |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.