PH01179346G0010's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT4G22350 : 3.60E-61
Blast annotation: Ubiquitin C-terminal hydrolases superfamily protein
2.Location
Scaffold: PH01179346
Strand: +
| Region | Start | End |
| gene | 44 | 665 |
| mRNA | 44 | 665 |
| exon | 44 | 215 |
| exon | 307 | 478 |
| exon | 572 | 665 |
| CDS | 44 | 215 |
| CDS | 307 | 478 |
| CDS | 572 | 665 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000715 | proton-transporting two-sector ATPase complex, catalytic domain, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, transferase activity, ubiquitin thiolesterase activity, ATP hydrolysis coupled proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 27 | 141 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.