PH01192815G0010's details annotation
1.Annotation
ICBR annotation: MSH-like DNA mismatch repair protein, putative
Blast result AT4G25540 : 7.50E-54
Blast annotation: homolog of DNA mismatch repair protein MSH3
2.Location
Scaffold: PH01192815
Strand: +
| Region | Start | End |
| gene | 99 | 593 |
| mRNA | 99 | 593 |
| exon | 99 | 593 |
| CDS | 99 | 593 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00488.20 | MutS_V | 1 | 164 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0006298 | mismatch repair |
| GO:0030983 | mismatched DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.