CFinderM000068's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
cellular protein modification process,1.24E-08GO:0006464
ubiquitin-protein ligase activity,2.99E-06GO:0004842
Ubiquitin_mediated_proteolysis4.14E-06KEGG
binding,4.50E-06GO:0005488
intracellular,0.00050289GO:0005622
protein binding,0.001721849GO:0005515
CE8 Carbohydrate_Esterases0.034871009GFam
GH28 Glycoside_Hydrolases0.034871009GFam
Alfin-like Transcription_Regulator(from iTAK)0.034871009GFam
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)0.034871009GFam
TORC1_complex0.038206301GO:0031931

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000010G2470Methyltransferase MT-A70 family proteinAT4G09980 (4.00E-174)
PH01000016G0560zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing proteinAT3G27700 (7.00E-119)
PH01000054G0960Ribosomal protein L36e family proteinAT3G53740 (1.80E-43)
PH01000059G0350LSD1-like 3AT4G16310 (0.00E+00)
PH01000087G1010Phototropic-responsive NPH3 family proteinAT3G19850 (6.00E-120)
PH01000102G0440ubiquitin-protein ligase 1AT1G55860 (0)
PH01000142G0800Phospholipase A2 family proteinAT2G06925 (1.80E-41)
PH01000284G0250Pectin lyase-like superfamily proteinAT5G19730 (3.00E-127)
PH01000287G0640RNA polymerase II transcription mediatorsAT4G00450 (0.00E+00)
PH01000370G0170Pectin lyase-like superfamily proteinAT3G61490 (2.70E-67)
PH01000397G0970transcription regulatorsAT1G02080 (0.00E+00)
PH01000433G0520HEAT repeat ;WD domain, G-beta repeat protein proteinAT3G08850 (0.00E+00)
PH01000503G0700RNA polymerase II transcription mediatorsAT1G55325 (0.00E+00)
PH01000577G0520RNA polymerase I-associated factor PAF67AT5G25757 (0.00E+00)
PH01000660G0570ubiquitin-protein ligase 1AT1G55860 (0.00E+00)
PH01001171G0230Ribosomal protein L6 familyAT1G33140 (2.30E-81)
PH01001608G0330eukaryotic translation initiation factor 4GAT3G60240 (6.00E-173)
PH01001699G0340P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT3G15120 (0.00E+00)
PH01001762G0040alfin-like 1AT5G05610 (7.60E-86)
PH01001974G0260-AT5G06830 (3.00E-167)
PH01002905G0130tubulin folding cofactor BAT3G10220 (2.70E-86)
PH01002936G0100ribonuclease P family protein / Rpp14 family proteinAT1G04635 (1.80E-31)
PH01003025G0200ubiquitin-protein ligase 1AT1G55860 (0.00E+00)
PH01003331G0020calcium-dependent lipid-binding family proteinAT1G48090 (0.00E+00)
PH01003708G0150AAA-type ATPase family proteinAT1G02890 (0.00E+00)
PH01004598G0010HEAT repeat ;HECT-domain (ubiquitin-transferase)AT4G38600 (0.00E+00)
PH01004867G0080ubiquitin-protein ligase 1AT1G55860 (0)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000007methylation,
nucleobase-containing compound metabolic process,
details
CFinderM000041Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
details
CFinderM000067GT57 GlycosylTransferases
mitochondrial_respiratory_chain_complex_III
endoplasmic reticulum membrane,
methylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
N-Glycan_biosynthesis
Oxidative_phosphorylation
nucleobase-containing compound metabolic process,
details
CFinderM000074Ribosome
translation,
structural constituent of ribosome,
intracellular,
details
CFinderM000107diaminopimelate epimerase activity,
pyrroline-5-carboxylate reductase activity,
translation,
proline biosynthetic process,
lysine biosynthetic process via diaminopimelate,
eukaryotic translation elongation factor 1 complex,
translational elongation,
cellular protein modification process,
Lysine_biosynthesis
intracellular,
translation elongation factor activity,
details
CFinderM000134mediator complex,
methylation,
regulation of transcription from RNA polymerase II promoter,
details
CFinderM000142ZF-HD Transcription_Regulator(from PlantTFDB)
methylation,
nucleobase-containing compound metabolic process,
ubiquitin-dependent protein catabolic process,
details
CFinderM000146cellular protein modification process,
intracellular,
Ubiquitin_mediated_proteolysis
details
CFinderM000284cellular protein modification process,
Ubiquitin_mediated_proteolysis
intracellular,
ubiquitin-protein ligase activity,
binding,
details
CFinderM000344signal peptidase complex,
Protein_export
methylation,
signal peptide processing,
nucleobase-containing compound metabolic process,
details
CFinderM000352Ribosome
translation,
Ribosome
intracellular,
structural constituent of ribosome,
translational initiation,
transcription, DNA-dependent,
RNA_polymerase
details
CFinderM000353intracellular,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
Ribosome
ubiquitin-protein ligase activity,
Ribosome
translation,
methylation,
translational initiation,
nucleobase-containing compound metabolic process,
RNA_polymerase
structural constituent of ribosome,
transcription, DNA-dependent,
details
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM000590Ribosome
translation,
structural constituent of ribosome,
SNF2 Transcription_Regulator(from iTAK)
intracellular,
RNA_degradation
details
CFinderM000687Ubiquitin_mediated_proteolysis
GH35 Glycoside_Hydrolases

cullin-RING ubiquitin ligase complex,
Nucleotide_excision_repair
metallocarboxypeptidase activity,
details
CFinderM000769cellular protein modification process,
Ubiquitin_mediated_proteolysis
ubiquitin-protein ligase activity,
intracellular,
binding,
carbon-sulfur lyase activity,
details
CFinderM000838Ribosome
translation,
structural constituent of ribosome,
methylation,
large ribosomal subunit,
intracellular,
nucleobase-containing compound metabolic process,
details
CFinderM000891cellular protein modification process,
Ubiquitin_mediated_proteolysis
binding,
ubiquitin-protein ligase activity,
SNF2 Transcription_Regulator(from iTAK)
RNA metabolic process,
intracellular,
details
CFinderM000911intracellular,
Ribosome
translation,
PHD Transcription_Regulator(from iTAK)
structural constituent of ribosome,
protein import into nucleus,
details
CFinderM000912intracellular,
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Ribosome
translation,
cellular protein modification process,
structural constituent of ribosome,
Ubiquitin_mediated_proteolysis
details
CFinderM001017calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
RNA_degradation
details
CFinderM001147SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Alfin-like Transcription_Regulator(from iTAK)
nucleotidyltransferase activity,
TORC1_complex
mediator complex,
phospholipid metabolic process,
TOR_signaling
phospholipase A2 activity,
lipid catabolic process,
methylation,
Linoleic_acid_metabolism
Arachidonic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
details
CFinderM001175SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
details
CFinderM001202mediator complex,
L-arabinose metabolic process,
regulation of transcription from RNA polymerase II promoter,
alpha-N-arabinofuranosidase activity,
RNA_polymerase_II_transcription_cofactor_activity
details
CFinderM001218details
CFinderM001221cellular protein modification process,
phospholipid metabolic process,
Alfin-like Transcription_Regulator(from iTAK)
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
lipid catabolic process,
phospholipase A2 activity,
zinc ion binding,
intracellular,
protein binding,
binding,
Arachidonic_acid_metabolism
Linoleic_acid_metabolism
Ether_lipid_metabolism
alpha-Linolenic_acid_metabolism
Glycerophospholipid_metabolism
details
CFinderM001230base-excision repair,
mRNA_surveillance_pathway
DNA repair,
details
CFinderM001484RLK-Pelle_RLCK-VI (from iTAK)
mRNA_surveillance_pathway
details
CFinderM001520SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Glycine,_serine_and_threonine_metabolism
L-serine biosynthetic process,
RNA metabolic process,
Methane_metabolism
phosphoglycerate dehydrogenase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity
details
CFinderM001579mediator complex,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
RNA_polymerase_II_transcription_cofactor_activity
vesicle-mediated transport,
nucleotidyltransferase activity,
details
CFinderM001586mediator complex,
regulation of transcription from RNA polymerase II promoter,
transcription, DNA-dependent,
ribonucleoside_binding
RNA_polymerase_II_transcription_cofactor_activity
RNA_polymerase
details
CFinderM001820mediator complex,
CBM43 Carbohydrate-Binding_Modules
GH17 Glycoside_Hydrolases
details
CFinderM001849SNF2 Transcription_Regulator(from iTAK)
mediator complex,
regulation of transcription from RNA polymerase II promoter,
details

4.Expression profilings


Show details about module gene expression profiling