1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | cellular protein modification process, | 1.24E-08 | GO:0006464 | ubiquitin-protein ligase activity, | 2.99E-06 | GO:0004842 | Ubiquitin_mediated_proteolysis | 4.14E-06 | KEGG | binding, | 4.50E-06 | GO:0005488 | intracellular, | 0.00050289 | GO:0005622 | protein binding, | 0.001721849 | GO:0005515 | CE8 Carbohydrate_Esterases | 0.034871009 | GFam | GH28 Glycoside_Hydrolases | 0.034871009 | GFam | Alfin-like Transcription_Regulator(from iTAK) | 0.034871009 | GFam | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) | 0.034871009 | GFam | TORC1_complex | 0.038206301 | GO:0031931 |
2.Module member annotation
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000007 | methylation, nucleobase-containing compound metabolic process,
| details | CFinderM000041 | Oxidative_phosphorylation respiratory electron transport chain, mitochondrial inner membrane,
| details | CFinderM000067 | GT57 GlycosylTransferases mitochondrial_respiratory_chain_complex_III endoplasmic reticulum membrane, methylation, mitochondrial electron transport, ubiquinol to cytochrome c, N-Glycan_biosynthesis Oxidative_phosphorylation nucleobase-containing compound metabolic process,
| details | CFinderM000074 | Ribosome translation, structural constituent of ribosome, intracellular,
| details | CFinderM000107 | diaminopimelate epimerase activity, pyrroline-5-carboxylate reductase activity, translation, proline biosynthetic process, lysine biosynthetic process via diaminopimelate, eukaryotic translation elongation factor 1 complex, translational elongation, cellular protein modification process, Lysine_biosynthesis intracellular, translation elongation factor activity,
| details | CFinderM000134 | mediator complex, methylation, regulation of transcription from RNA polymerase II promoter,
| details | CFinderM000142 | ZF-HD Transcription_Regulator(from PlantTFDB) methylation, nucleobase-containing compound metabolic process, ubiquitin-dependent protein catabolic process,
| details | CFinderM000146 | cellular protein modification process, intracellular, Ubiquitin_mediated_proteolysis
| details | CFinderM000284 | cellular protein modification process, Ubiquitin_mediated_proteolysis intracellular, ubiquitin-protein ligase activity, binding,
| details | CFinderM000344 | signal peptidase complex, Protein_export methylation, signal peptide processing, nucleobase-containing compound metabolic process,
| details | CFinderM000352 | Ribosome translation, Ribosome intracellular, structural constituent of ribosome, translational initiation, transcription, DNA-dependent, RNA_polymerase
| details | CFinderM000353 | intracellular, cellular protein modification process, Ubiquitin_mediated_proteolysis Ribosome ubiquitin-protein ligase activity, Ribosome translation, methylation, translational initiation, nucleobase-containing compound metabolic process, RNA_polymerase structural constituent of ribosome, transcription, DNA-dependent,
| details | CFinderM000545 | binding, SNF2 Transcription_Regulator(from iTAK) helicase activity, ubiquitin-protein ligase activity, cellular protein modification process, TOR_signaling nucleic acid binding, TORC1_complex DNA binding, hydrolase_activity,_acting_on_acid_anhydrides RNA metabolic process, RNA_transport nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, Ubiquitin_mediated_proteolysis nucleotide binding, RNA binding, ATP binding, protein binding,
| details | CFinderM000590 | Ribosome translation, structural constituent of ribosome, SNF2 Transcription_Regulator(from iTAK) intracellular, RNA_degradation
| details | CFinderM000687 | Ubiquitin_mediated_proteolysis GH35 Glycoside_Hydrolases
cullin-RING ubiquitin ligase complex, Nucleotide_excision_repair metallocarboxypeptidase activity,
| details | CFinderM000769 | cellular protein modification process, Ubiquitin_mediated_proteolysis ubiquitin-protein ligase activity, intracellular, binding, carbon-sulfur lyase activity,
| details | CFinderM000838 | Ribosome translation, structural constituent of ribosome, methylation, large ribosomal subunit, intracellular, nucleobase-containing compound metabolic process,
| details | CFinderM000891 | cellular protein modification process, Ubiquitin_mediated_proteolysis binding, ubiquitin-protein ligase activity, SNF2 Transcription_Regulator(from iTAK) RNA metabolic process, intracellular,
| details | CFinderM000911 | intracellular, Ribosome translation, PHD Transcription_Regulator(from iTAK) structural constituent of ribosome, protein import into nucleus,
| details | CFinderM000912 | intracellular, SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Ribosome translation, cellular protein modification process, structural constituent of ribosome, Ubiquitin_mediated_proteolysis
| details | CFinderM001017 | calcium-dependent cysteine-type endopeptidase activity, mechanically-gated_ion_channel_activity RNA_degradation
| details | CFinderM001147 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Alfin-like Transcription_Regulator(from iTAK) nucleotidyltransferase activity, TORC1_complex mediator complex, phospholipid metabolic process, TOR_signaling phospholipase A2 activity, lipid catabolic process, methylation, Linoleic_acid_metabolism Arachidonic_acid_metabolism Ether_lipid_metabolism alpha-Linolenic_acid_metabolism
| details | CFinderM001175 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
| details | CFinderM001202 | mediator complex, L-arabinose metabolic process, regulation of transcription from RNA polymerase II promoter, alpha-N-arabinofuranosidase activity, RNA_polymerase_II_transcription_cofactor_activity
| details | CFinderM001218 | | details | CFinderM001221 | cellular protein modification process, phospholipid metabolic process, Alfin-like Transcription_Regulator(from iTAK) ubiquitin-protein ligase activity, Ubiquitin_mediated_proteolysis lipid catabolic process, phospholipase A2 activity, zinc ion binding, intracellular, protein binding, binding, Arachidonic_acid_metabolism Linoleic_acid_metabolism Ether_lipid_metabolism alpha-Linolenic_acid_metabolism Glycerophospholipid_metabolism
| details | CFinderM001230 | base-excision repair, mRNA_surveillance_pathway DNA repair,
| details | CFinderM001484 | RLK-Pelle_RLCK-VI (from iTAK) mRNA_surveillance_pathway
| details | CFinderM001520 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Glycine,_serine_and_threonine_metabolism L-serine biosynthetic process, RNA metabolic process, Methane_metabolism phosphoglycerate dehydrogenase activity, glycopeptide_alpha-N-acetylgalactosaminidase_activity
| details | CFinderM001579 | mediator complex, vesicle docking involved in exocytosis, regulation of transcription from RNA polymerase II promoter, RNA_polymerase_II_transcription_cofactor_activity vesicle-mediated transport, nucleotidyltransferase activity,
| details | CFinderM001586 | mediator complex, regulation of transcription from RNA polymerase II promoter, transcription, DNA-dependent, ribonucleoside_binding RNA_polymerase_II_transcription_cofactor_activity RNA_polymerase
| details | CFinderM001820 | mediator complex, CBM43 Carbohydrate-Binding_Modules GH17 Glycoside_Hydrolases
| details | CFinderM001849 | SNF2 Transcription_Regulator(from iTAK) mediator complex, regulation of transcription from RNA polymerase II promoter,
| details |
4.Expression profilings |