CFinderM000112's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SNF2 Transcription_Regulator(from iTAK)0.000275075GFam
chromatin remodeling,0.008737607GO:0006338
ATP-dependent chromatin remodeling,0.008737607GO:0043044
CE8 Carbohydrate_Esterases0.010812906GFam
nucleic acid binding,0.013607371GO:0003676
helicase activity,0.013607371GO:0004386
5'-3' exoribonuclease activity,0.013607371GO:0004534
nucleosome binding,0.013607371GO:0031491
GT1 GlycosylTransferases0.018771364GFam
cell wall modification,0.02242604GO:0042545
nucleus,0.032925039GO:0005634
cell wall,0.032925039GO:0005618
nucleobase-containing compound metabolic process,0.032935747GO:0006139
exonuclease activity,0.041312141GO:0004527

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000032G0820methylesterase PCR AAT1G11580 (6.20E-87)
PH01000056G1370chromatin remodeling 5AT2G13370 (0.00E+00)
PH01000174G0870exoribonuclease 4AT1G54490 (0.00E+00)
PH01000238G0300bindingAT3G06670 (1.00E-101)
PH01000370G1010RING/U-box superfamily proteinAT1G76410 (7.70E-31)
PH01001592G0250chromatin-remodeling protein 11AT3G06400 (0.00E+00)
PH01007571G0010UDP-glucosyl transferase 71C4AT1G07250 (7.70E-74)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000151SNF2 Transcription_Regulator(from iTAK)
response to oxidative stress,
ATP-dependent helicase activity,
helicase activity,
peroxidase activity,
heme binding,
oxidation-reduction process,
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
Methane_metabolism
nucleic acid binding,
details
CFinderM000201RLK-Pelle_CrRLK1L-1 (from iTAK)
5'-3' exoribonuclease activity,
nucleobase-containing compound metabolic process,
Ribosome_biogenesis_in_eukaryotes
RNA_degradation
details
CFinderM001017calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
RNA_degradation
details
CFinderM001305SNF2 Transcription_Regulator(from iTAK)
5'-3' exoribonuclease activity,
nucleic acid binding,
intracellular,
large ribosomal subunit,
nucleobase-containing compound metabolic process,
exonuclease activity,
details
CFinderM001316SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ATP-dependent helicase activity,
ATP binding,
monooxygenase activity,
fructose-bisphosphate aldolase activity,
DNA binding,
protein catabolic process,
details
CFinderM001782ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
mechanically-gated_ion_channel_activity
SNF2 Transcription_Regulator(from iTAK)
details
CFinderM001812intracellular transport,
5'-3' exoribonuclease activity,
nucleobase-containing compound metabolic process,
exonuclease activity,
Ribosome_biogenesis_in_eukaryotes
RNA_degradation
details

4.Expression profilings