|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | nuclear chromosome, | 4.59E-06 | GO:0000228 | | riboflavin synthase complex, | 0.00112493 | GO:0009349 | | riboflavin biosynthetic process, | 0.012729693 | GO:0009231 | | phosphoglycerate kinase activity, | 0.014697473 | GO:0004618 | | glycolysis, | 0.031588544 | GO:0006096 | | Riboflavin_metabolism | 0.047719783 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000123G1110 | phosphoglycerate kinase | AT1G79550 (0.00E+00) | | PH01000235G0820 | sister chromatid cohesion 1 protein 4 | AT5G16270 (5.00E-106) | | PH01000244G0890 | sister chromatid cohesion 1 protein 4 | AT5G16270 (3.90E-60) | | PH01001565G0360 | cell division cycle 5 | AT1G09770 (1.10E-42) | | PH01002270G0240 | ATP-dependent helicase family protein | AT1G08060 (1.30E-88) | | PH01002641G0230 | 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase | AT2G44050 (4.40E-39) | | PH01004006G0080 | apyrase 1 | AT3G04080 (3.00E-109) | | PH01004134G0020 | glucuronokinase G | AT3G01640 (5.00E-115) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000117 | nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
| details | | CFinderM000817 | riboflavin synthase complex,
ubiquitin protein ligase binding,
cullin-RING ubiquitin ligase complex,
Riboflavin_metabolism
riboflavin biosynthetic process,
cellular amino acid biosynthetic process,
Nucleotide_excision_repair
| details | | CFinderM000842 | Carbon_fixation_in_photosynthetic_organisms
nuclear chromosome,
Ino80_complex
ribulose-phosphate 3-epimerase activity,
helicase activity,
phosphoglycerate kinase activity,
SNF2 Transcription_Regulator(from iTAK)
racemase and epimerase activity, acting on carbohydrates and derivatives,
Pentose_phosphate_pathway
Pentose_and_glucuronate_interconversions
pentose-phosphate shunt,
| details | | CFinderM000843 | ribulose-phosphate 3-epimerase activity,
helicase activity,
SNF2 Transcription_Regulator(from iTAK)
racemase and epimerase activity, acting on carbohydrates and derivatives,
pentose-phosphate shunt,
Carbon_fixation_in_photosynthetic_organisms
Pentose_and_glucuronate_interconversions
Pentose_phosphate_pathway
| details | | CFinderM000883 | sterol metabolic process,
nuclear chromosome,
cholestenol delta-isomerase activity,
Nitrogen_metabolism
Steroid_biosynthesis
| details | | CFinderM001835 | MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
nuclear chromosome,
chromatin binding,
| details |
4.Expression profilings |
