CFinderM000208's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Endocytosis0.018055548KEGG
vesicle docking involved in exocytosis,0.024976176GO:0006904
GATA Transcription_Regulator(from PlantTFDB)0.029041833GFam
TALE Transcription_Regulator(from PlantTFDB)0.029041833GFam
HB-BELL Transcription_Regulator(from iTAK)0.029041833GFam
C2C2-GATA Transcription_Regulator(from iTAK)0.029041833GFam
RLK-Pelle_L-LEC (from iTAK)0.029041833GFam
GRAS Transcription_Regulator(from PlantTFDB)0.029041833GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000000G7400GRAS family transcription factorAT4G00150 (9.80E-76)
PH01000083G1470-AT1G75140 (3.00E-104)
PH01000139G0610BEL1-like homeodomain 8AT2G27990 (4.20E-61)
PH01000470G0700vacuolar protein sorting 45AT1G77140 (0.00E+00)
PH01001451G0450GATA transcription factor 5AT5G66320 (1.20E-35)
PH01002801G0180Concanavalin A-like lectin protein kinase family proteinAT3G53380 (1.50E-81)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000023Endocytosis
vesicle docking involved in exocytosis,
RLK-Pelle_LRR-XI-1 (from iTAK)
WRKY Transcription_Regulator(from PlantTFDB)
details
CFinderM000027Butanoate_metabolism
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
intracellular membrane-bounded organelle,
pyruvate dehydrogenase (acetyl-transferring) activity,
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
vesicle docking involved in exocytosis,
Endocytosis
details
CFinderM000045RLK-Pelle_LRR-VII-1 (from iTAK)
details
CFinderM000049vesicle docking involved in exocytosis,
Endocytosis
ubiquitin thiolesterase activity,
details
CFinderM000071Endocytosis
vesicle docking involved in exocytosis,
details
CFinderM000074Ribosome
translation,
structural constituent of ribosome,
intracellular,
details
CFinderM000089RLK-Pelle_LRR-VII-1 (from iTAK)
RLK-Pelle_LRR-XI-1 (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
ATP binding,
vesicle docking involved in exocytosis,
Endocytosis
vesicle-mediated transport,
protein serine/threonine kinase activity,
protein binding,
details
CFinderM000096NF-X1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-Xa (from iTAK)
Endocytosis
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
details
CFinderM000138RLK-Pelle_LRR-Xa (from iTAK)
GRAS Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
details
CFinderM000141Other_glycan_degradation
alpha-L-fucosidase activity,
vesicle docking involved in exocytosis,
carbohydrate metabolic process,
Endocytosis
details
CFinderM000147mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
GRAS Transcription_Regulator(from PlantTFDB)
Endocytosis
vesicle docking involved in exocytosis,
details
CFinderM000165oxidoreductase activity, acting on CH-OH group of donors,
flavin adenine dinucleotide binding,
oxidation-reduction process,
vesicle docking involved in exocytosis,
Valine,_leucine_and_isoleucine_degradation
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor,
Histidine_metabolism
Limonene_and_pinene_degradation
Propanoate_metabolism
Tryptophan_metabolism
Lysine_degradation
Chloroalkane_and_chloroalkene_degradation
beta-Alanine_metabolism
Fatty_acid_metabolism
Glycerolipid_metabolism
Ascorbate_and_aldarate_metabolism
Pentose_and_glucuronate_interconversions
details
CFinderM000167riboflavin synthase activity,
Riboflavin_metabolism
vesicle docking involved in exocytosis,
riboflavin biosynthetic process,
details
CFinderM000198arginine decarboxylase activity,
vesicle docking involved in exocytosis,
spermidine biosynthetic process,
arginine catabolic process,
Endocytosis
RNA_degradation
details
CFinderM000276C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
Endocytosis
RLK-Pelle_LRR-III (from iTAK)
vesicle docking involved in exocytosis,
details
CFinderM000292Basal_transcription_factors
nucleus,
HSF Transcription_Regulator(from PlantTFDB)
vesicle docking involved in exocytosis,
Endocytosis
details
CFinderM000322Endocytosis
protein refolding,
vesicle docking involved in exocytosis,
nucleus,
details
CFinderM000417Spliceosome
nucleotide binding,
nucleic acid binding,
vesicle docking involved in exocytosis,
Endocytosis
vesicle-mediated transport,
details
CFinderM000423Endocytosis
proteolysis,
vesicle docking involved in exocytosis,
details
CFinderM000440Endocytosis
cell wall,
apoplast,
xyloglucan:xyloglucosyl transferase activity,
cellular glucan metabolic process,
vesicle docking involved in exocytosis,
serine-type carboxypeptidase activity,
details
CFinderM000476Oxidative_phosphorylation
mitochondrial envelope,
mitochondrial_respiratory_chain_complex_III
vesicle docking involved in exocytosis,
mitochondrial electron transport, ubiquinol to cytochrome c,
ATPase activity, coupled to transmembrane movement of substances,
ubiquitin thiolesterase activity,
Endocytosis
Phagosome
details
CFinderM000491intracellular,
GDP-mannose metabolic process,
ubiquitin-dependent protein catabolic process,
intracellular transport,
GDP-mannose 4,6-dehydratase activity,
Ribosome
translation,
vesicle docking involved in exocytosis,
proteasome core complex, alpha-subunit complex,
proteasome core complex,
large ribosomal subunit,
Ribosome
proteolysis involved in cellular protein catabolic process,
structural constituent of ribosome,
endopeptidase activity,
threonine-type endopeptidase activity,
details
CFinderM000657vesicle docking involved in exocytosis,
Oxidative_phosphorylation
Endocytosis
nucleosome,
vesicle-mediated transport,
nucleosome assembly,
details
CFinderM000867protein complex,
mediator complex,
RNA_polymerase_II_transcription_cofactor_activity
protein polymerization,
regulation of transcription from RNA polymerase II promoter,
vesicle docking involved in exocytosis,
vesicle-mediated transport,
GTP_catabolic_process
details
CFinderM001023vesicle docking involved in exocytosis,
vesicle-mediated transport,
details
CFinderM001185NF-YC Transcription_Regulator(from PlantTFDB)
mediator complex,
CCAAT-binding factor complex,
GATA Transcription_Regulator(from PlantTFDB)
C2C2-GATA Transcription_Regulator(from iTAK)
Endocytosis
RNA_polymerase_II_transcription_cofactor_activity
sequence-specific DNA binding,
sequence-specific DNA binding transcription factor activity,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
regulation of transcription, DNA-dependent,
vesicle-mediated transport,
protein_heterodimerization_activity
details

4.Expression profilings