CFinderM000220's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
phospholipid metabolic process,0.009447808GO:0006644
N-methyltransferase activity,0.012476955GO:0008170
Phosphatidylinositol_signaling_system0.018748676KEGG
phosphoglycolate phosphatase activity,0.028042459GO:0008967

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000003G4010-- (-)
PH01000029G1340calmodulin 1AT5G37780 (5.60E-77)
PH01000110G0500phytochrome interacting factor 4AT2G43010 (1.00E-32)
PH01000302G0960zinc knuckle (CCHC-type) family proteinAT5G49930 (0.00E+00)
PH01000328G0720RmlC-like cupins superfamily proteinAT4G10300 (4.70E-45)
PH01000356G0620Haloacid dehalogenase-like hydrolase (HAD) superfamily proteinAT2G33255 (8.40E-88)
PH01000561G0770F-box/RNI-like superfamily proteinAT4G13960 (3.10E-10)
PH01001569G0100phospholipid N-methyltransferaseAT1G80860 (7.30E-69)
PH01002623G0230pfkB-like carbohydrate kinase family proteinAT1G19600 (3.00E-109)
PH01003165G0160-AT5G15802 (1.00E-31)
PH01004045G0160-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000302nucleosome assembly,
nucleosome,
protein_heterodimerization_activity
LBD Transcription_Regulator(from PlantTFDB)
RNA_degradation
nucleic acid binding,
details
CFinderM000354chromosome,
DNA metabolic process,
details
CFinderM000503details
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM000750CO-like Transcription_Regulator(from PlantTFDB)
C2C2-CO-like Transcription_Regulator(from iTAK)
zinc ion binding,
intracellular,
Others Transcription_Regulator(from iTAK)
actin binding,
protein binding,
details
CFinderM000908barrier_septum_assembly
Phosphatidylinositol_signaling_system
nucleosome,
details
CFinderM001230base-excision repair,
mRNA_surveillance_pathway
DNA repair,
details
CFinderM001484RLK-Pelle_RLCK-VI (from iTAK)
mRNA_surveillance_pathway
details
CFinderM001853peroxisome organization,
integral_component_of_peroxisomal_membrane
cullin-RING ubiquitin ligase complex,
bZIP Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings


Show details about module gene expression profiling