CFinderM000256's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
signal recognition particle,0.046910973GO:0048500
proton-transporting two-sector ATPase complex, proton-transporting domain,0.046910973GO:0033177

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000032G2010RNI-like superfamily proteinAT5G45500 (1.10E-75)
PH01000033G0230signal recognition particle 19 kDa protein, putative / SRP19, putativeAT1G48160 (1.40E-43)
PH01000090G0270HhH-GPD base excision DNA repair family proteinAT5G04560 (1.60E-75)
PH01000324G0270nuclear poly(a) polymeraseAT4G32850 (0.00E+00)
PH01000331G1130Pleckstrin homology (PH) domain-containing proteinAT2G30880 (1.80E-35)
PH01000437G0690phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeAT4G39280 (3.30E-96)
PH01000604G0340DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domainAT5G60410 (8.00E-171)
PH01000910G0290-- (-)
PH01000918G0260ATPase, F0/V0 complex, subunit C proteinAT1G19910 (1.40E-60)
PH01001076G0500ENHANCED DOWNY MILDEW 2AT5G55390 (4.00E-153)
PH01001631G0300RNA polymerase II transcription mediatorsAT1G55325 (0.00E+00)
PH01001896G0200Protein of unknown function (DUF1162)AT5G24740 (1.80E-80)
PH01002328G0180proteasome family proteinAT2G19560 (3.00E-105)
PH01002364G0090RNA polymerase II transcription mediatorsAT3G04740 (2.30E-67)
PH01002395G0300SERINE CARBOXYPEPTIDASE-LIKE 49AT3G10410 (0.00E+00)
PH01002604G0140histone-lysine N-methyltransferasesAT3G26850 (7.50E-17)
PH01002604G0160-- (-)
PH01002867G0190target of rapamycinAT1G50030 (0.00E+00)
PH01002904G0110phosphatidylinositol 4-OH kinase beta1AT5G64070 (0.00E+00)
PH01002946G0060-AT4G31430 (3.50E-15)
PH01003904G0020-- (-)
PH01005465G0070MEI2-like 3AT4G18120 (4.00E-26)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000481proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
details
CFinderM000537Ribosome
eukaryotic translation initiation factor 3 complex,
details
CFinderM000760CMGC_CLK (from iTAK)
cullin-RING ubiquitin ligase complex,
cytoplasm,
SET Transcription_Regulator(from iTAK)
details
CFinderM000860protein targeting,
drug_binding
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
details
CFinderM000910translation,
phosphopyruvate hydratase complex,
Ribosome
intracellular,
small ribosomal subunit,
phosphopyruvate hydratase activity,
structural constituent of ribosome,
glycolysis,
Methane_metabolism
RNA_degradation
Glycolysis_/_Gluconeogenesis
details
CFinderM000938proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
details
CFinderM001081proteasome complex,
regulation of protein catabolic process,
enzyme regulator activity,
Rcd1-like Transcription_Regulator(from iTAK)
Proteasome
binding,
transcription factor TFIID complex,
glycyl-tRNA aminoacylation,
RLK-Pelle_LRR-XII-1 (from iTAK)
glycine-tRNA ligase activity,
details
CFinderM001242mitotic_spindle_assembly_checkpoint
WASH_complex
PHD Transcription_Regulator(from iTAK)
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
details
CFinderM001402phosphatidylinositol-mediated signaling,
RNA 3'-end processing,
RNA polyadenylation,
phosphatidylinositol_biosynthetic_process
phosphatidylinositol phosphorylation,
1-phosphatidylinositol_4-kinase_activity
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
mRNA_surveillance_pathway
polynucleotide adenylyltransferase activity,
details
CFinderM001410PHD Transcription_Regulator(from iTAK)
mediator complex,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
regulation of transcription from RNA polymerase II promoter,
ATP hydrolysis coupled proton transport,
RNA metabolic process,
zinc ion binding,
protein binding,
RNA_polymerase_II_transcription_cofactor_activity
N-acetyltransferase_activity
hydrogen ion transmembrane transporter activity,
DNA binding,
details
CFinderM001411proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
details
CFinderM001581WASH_complex
DNA_ligation_involved_in_DNA_repair
drug_binding
DNA_ligase_activity
DNA ligase (ATP) activity,
DNA recombination,
DNA repair,
details
CFinderM001638tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
details
CFinderM001649CMGC_CDK-PITSLRE (from iTAK)
LUG Transcription_Regulator(from iTAK)
sphingolipid metabolic process,
glucosylceramidase activity,
details
CFinderM001650sphingolipid metabolic process,
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
glucosylceramidase activity,
Butanoate_metabolism
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
serine-type carboxypeptidase activity,
nucleotidyltransferase activity,
details
CFinderM001679PHD Transcription_Regulator(from iTAK)
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
Butanoate_metabolism
nucleotidyltransferase activity,
serine-type carboxypeptidase activity,
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
details
CFinderM001789proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
C3H Transcription_Regulator(from PlantTFDB)
ATP hydrolysis coupled proton transport,
DNA repair,
nuclease activity,
endonuclease activity,
hydrogen ion transmembrane transporter activity,
details
CFinderM001799Various_types_of_N-glycan_biosynthesis
Base_excision_repair
N-Glycan_biosynthesis
nuclease activity,
endonuclease activity,
NAC Transcription_Regulator(from PlantTFDB)
details
CFinderM001830WASH_complex
drug_binding
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
Butanoate_metabolism
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
details
CFinderM001841proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
details

4.Expression profilings


Show details about module gene expression profiling