1.Module annotation (GSEA enrichment result) Function Annotation | FDR | Gene Ontolog | cellular protein modification process, | 0.001510208 | GO:0006464 | protein neddylation, | 0.009356254 | GO:0045116 | phosphopyruvate hydratase complex, | 0.010298651 | GO:0000015 | NF-YB Transcription_Regulator(from PlantTFDB) | 0.01682113 | GFam | PLATZ Transcription_Regulator(from iTAK) | 0.01682113 | GFam | RLK-Pelle_LRR-VI-2 (from iTAK) | 0.022680164 | GFam |
2.Module member annotation Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | PH01000030G0460 | PLATZ transcription factor family protein | AT1G32700 (1.80E-77) | PH01000122G1500 | aromatic and neutral transporter 1 | AT3G11900 (3.00E-114) | PH01000209G0280 | E1 C-terminal related 1 | AT5G19180 (4.00E-176) | PH01000399G0890 | nuclear factor Y, subunit B12 | AT5G08190 (8.10E-46) | PH01000698G0590 | ACT domain repeat 8 | AT1G12420 (1.00E-65) | PH01001115G0650 | cytosolic enolase | AT2G29560 (2.00E-164) | PH01001658G0380 | Leucine-rich repeat protein kinase family protein | AT4G18640 (3.40E-45) | PH01003434G0100 | Ubiquitin-conjugating enzyme/RWD-like protein | AT2G38830 (1.60E-24) | PH01003483G0210 | temperature-induced lipocalin | AT5G58070 (7.90E-76) | PH01004181G0160 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | AT5G08790 (8.90E-70) | PH01005823G0030 | ARM repeat superfamily protein | AT1G08315 (3.30E-56) |
3.Direct connection functional modules Module ID | Function Annotation | Overlap condition | CFinderM000051 | Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis protein neddylation, steroid biosynthetic process, Flavonoid_biosynthesis cellular protein modification process, transferase activity, transferring acyl groups other than amino-acyl groups, small protein activating enzyme activity, 3-beta-hydroxy-delta5-steroid dehydrogenase activity,
| details | CFinderM000052 | protein neddylation, cellular protein modification process, Ubiquitin_mediated_proteolysis small protein activating enzyme activity, calcium-dependent phospholipid binding,
| details | CFinderM000150 | Dof Transcription_Regulator(from PlantTFDB) PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VI-2 (from iTAK) C2C2-Dof Transcription_Regulator(from iTAK)
| details | CFinderM000209 | proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain, protein neddylation, Trihelix Transcription_Regulator(from PlantTFDB) cellular protein modification process, ATP hydrolysis coupled proton transport, ATP synthesis coupled proton transport, apoplast, Ubiquitin_mediated_proteolysis small protein activating enzyme activity, nutrient reservoir activity, hydrogen ion transmembrane transporter activity, manganese ion binding, serine-type peptidase activity,
| details | CFinderM000285 | ABC_transporters
| details | CFinderM000342 | ERF Transcription_Regulator(from PlantTFDB) AP2/ERF-ERF Transcription_Regulator(from iTAK)
| details | CFinderM000364 | GRAS Transcription_Regulator(from PlantTFDB) oxygen evolving complex, phosphopyruvate hydratase complex, extrinsic to membrane, photosystem II, phosphopyruvate hydratase activity, Glycolysis_/_Gluconeogenesis Methane_metabolism RNA_degradation
| details | CFinderM000386 | C2H2 Transcription_Regulator(from PlantTFDB) GH18 Glycoside_Hydrolases protein neddylation, Tify Transcription_Regulator(from iTAK)
| details | CFinderM000395 | NAC Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent,
| details | CFinderM000398 | protein neddylation, exocyst, apoplast, cellular protein modification process, exocytosis, Ubiquitin_mediated_proteolysis cysteine-type endopeptidase activity, small protein activating enzyme activity,
| details | CFinderM000451 | protein neddylation, Trihelix Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis small protein activating enzyme activity, cellular protein modification process,
| details | CFinderM000452 | protein neddylation, Trihelix Transcription_Regulator(from PlantTFDB) cellular protein modification process, Ubiquitin_mediated_proteolysis small protein activating enzyme activity, calcium-dependent phospholipid binding,
| details | CFinderM000606 | histone_H2A_acetylation CTP biosynthetic process, histone_H4_acetylation protein neddylation, nucleoside_diphosphate_phosphorylation UTP biosynthetic process, GTP biosynthetic process, carbohydrate phosphorylation, chromatin remodeling,
| details | CFinderM000654 | protein neddylation, RLK-Pelle_CR4L (from iTAK) cellular protein modification process, Ubiquitin_mediated_proteolysis
| details | CFinderM000663 | protein neddylation, RLK-Pelle_RLCK-VIIa-2 (from iTAK) chromosome, DNA topological change, DNA metabolic process, apoplast, cellular protein modification process, Ubiquitin_mediated_proteolysis small protein activating enzyme activity, DNA topoisomerase (ATP-hydrolyzing) activity,
| details | CFinderM000699 | GH18 Glycoside_Hydrolases Amino_sugar_and_nucleotide_sugar_metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, cellular protein modification process,
| details | CFinderM000742 | protein neddylation, cellular protein modification process, Ubiquitin_mediated_proteolysis Cysteine_and_methionine_metabolism Tify Transcription_Regulator(from iTAK)
| details | CFinderM000836 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, cellular protein modification process, nitrogen compound metabolic process, response to stress,
| details | CFinderM000903 | protein neddylation, RLK-Pelle_WAK_LRK10L-1 (from iTAK) Ubiquitin_mediated_proteolysis cellular protein modification process, NAC Transcription_Regulator(from PlantTFDB)
| details | CFinderM000943 | NAC Transcription_Regulator(from PlantTFDB) GH18 Glycoside_Hydrolases catalytic activity, carbohydrate metabolic process, Amino_sugar_and_nucleotide_sugar_metabolism regulation of transcription, DNA-dependent,
| details | CFinderM001022 | IWS1 Transcription_Regulator(from iTAK) protein neddylation, cellular protein modification process, Ubiquitin_mediated_proteolysis transcription, DNA-dependent, small protein activating enzyme activity,
| details | CFinderM001071 | GH18 Glycoside_Hydrolases Amino_sugar_and_nucleotide_sugar_metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, cellular protein modification process,
| details | CFinderM001110 | Ubiquitin_mediated_proteolysis acid-amino acid ligase activity, protein neddylation, cellular protein modification process, small protein activating enzyme activity,
| details | CFinderM001412 | protein neddylation, PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VI-2 (from iTAK) cellular protein modification process, Ubiquitin_mediated_proteolysis RNA_degradation small protein activating enzyme activity,
| details | CFinderM001413 | protein neddylation, IWS1 Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VI-2 (from iTAK) C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis cellular protein modification process, small protein activating enzyme activity,
| details | CFinderM001538 | oligopeptide transport, transporter activity,
| details | CFinderM001539 | protein methylation,
| details |
4.Expression profilings |