CFinderM000299's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nucleus,0.010960076GO:0005634
B3-ARF Transcription_Regulator(from iTAK)0.019234147GFam
RLK-Pelle_Extensin (from iTAK)0.019234147GFam
ARF Transcription_Regulator(from PlantTFDB)0.019234147GFam
GRF Transcription_Regulator(from PlantTFDB)0.019234147GFam
AGC_RSK-2 (from iTAK)0.019234147GFam
regulation of transcription, DNA-dependent,0.021015945GO:0006355
Nucleotide_excision_repair0.029450727KEGG
DNA_replication0.029450727KEGG
Mismatch_repair0.029450727KEGG
Homologous_recombination0.029450727KEGG
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity0.045474897GO:0000079
response to hormone stimulus,0.045474897GO:0009725
DNA metabolic process,0.045474897GO:0006259

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000183G0570auxin response factor 6AT1G30330 (0.00E+00)
PH01000274G1060Protein kinase superfamily proteinAT3G58690 (4.50E-90)
PH01000323G0570D6 protein kinase like 2AT5G47750 (0.00E+00)
PH01000455G0090Cyclin family proteinAT5G45190 (5.10E-32)
PH01001605G0350growth-regulating factor 1AT2G22840 (1.60E-50)
PH01002450G0280ATPase family associated with various cellular activities (AAA) AT1G21690 (1.00E-117)
PH01002736G0180RAS associated with diabetes protein 51AT5G20850 (2.00E-129)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000463exosome_(RNase_complex)
RNA_degradation
details
CFinderM000806Ribosome
translation,
intracellular,
structural constituent of ribosome,
5S rRNA binding,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
details
CFinderM001052RLK-Pelle_Extensin (from iTAK)
CMGC_GSK (from iTAK)
Endocytosis
multicellular organismal development,
regulation of ARF GTPase activity,
details
CFinderM001057RLK-Pelle_URK-1 (from iTAK)
NEK (from iTAK)
chromatin silencing at telomere,
chromatin modification,
histone acetylation,
details
CFinderM001105Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001243regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein_kinase_binding
NAD+ ADP-ribosyltransferase activity,
details
CFinderM001831details
CFinderM001832histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
details

4.Expression profilings