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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | nuclear mRNA splicing, via spliceosome, | 3.49E-07 | GO:0000398 | | dihydrodipicolinate synthase activity, | 5.35E-06 | GO:0008840 | | lysine biosynthetic process via diaminopimelate, | 1.33E-05 | GO:0009089 | | Lysine_biosynthesis | 3.85E-05 | KEGG | | spliceosomal complex, | 5.70E-05 | GO:0005681 | | lyase activity, | 0.000220565 | GO:0016829 | | snRNA_binding | 0.012677388 | GO:0017069 | | rRNA binding, | 0.023743372 | GO:0019843 | | metabolic process, | 0.048307763 | GO:0008152 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000249G0140 | dihydrodipicolinate synthase | AT2G45440 (9.00E-133) | | PH01000322G1150 | U2 small nuclear ribonucleoprotein B | AT2G30260 (1.80E-76) | | PH01000364G0200 | dihydrodipicolinate synthase | AT2G45440 (1.00E-135) | | PH01000895G0410 | Chaperone DnaJ-domain superfamily protein | AT4G12770 (5.20E-34) | | PH01002620G0300 | Ribosomal protein L20 | AT1G16740 (2.80E-54) | | PH01003144G0060 | - | AT3G58050 (0.00E+00) | | PH01003366G0140 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT4G30100 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000826 | dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,
| details | | CFinderM000985 | nuclear mRNA splicing, via spliceosome,
RLK-Pelle_RLCK-XII-1 (from iTAK)
spliceosomal complex,
cis-Golgi network,
Golgi membrane,
lysine biosynthetic process via diaminopimelate,
ER to Golgi vesicle-mediated transport,
dihydrodipicolinate synthase activity,
snRNA_binding
SNARE_interactions_in_vesicular_transport
Lysine_biosynthesis
protein binding,
lyase activity,
| details | | CFinderM001134 | Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
| details | | CFinderM001209 | Lysine_biosynthesis
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
| details | | CFinderM001428 | nuclear mRNA splicing, via spliceosome,
spliceosomal complex,
cell volume homeostasis,
COPII_vesicle_coating
lysine biosynthetic process via diaminopimelate,
chloride transport,
dihydrodipicolinate synthase activity,
snRNA_binding
Lysine_biosynthesis
| details |
4.Expression profilings |
