|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | pyridoxine biosynthetic process, | 0.010105302 | GO:0008615 | | S-adenosylmethionine_biosynthetic_process | 0.017670468 | GO:0006556 | | GT8 GlycosylTransferases | 0.037702779 | GFam | | pyridoxamine-phosphate oxidase activity, | 0.046888714 | GO:0004733 | | oxidoreductase activity, acting on the CH-NH2 group of donors, | 0.046888714 | GO:0016638 | | methionine adenosyltransferase activity, | 0.046888714 | GO:0004478 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000028G0890 | RNAhelicase-like 8 | AT4G00660 (4.00E-116) | | PH01000028G1230 | galacturonosyltransferase-like 3 | AT1G13250 (2.00E-117) | | PH01000109G1220 | vacuolar protein sorting-associated protein 28 homolog 1 | AT4G21560 (7.40E-68) | | PH01000195G1170 | NADH dehydrogenase (ubiquinone)s | AT1G14450 (8.20E-20) | | PH01001004G0380 | SIT4 phosphatase-associated family protein | AT1G30470 (0.00E+00) | | PH01001195G0450 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | AT5G53950 (1.10E-57) | | PH01001310G0310 | HYPERSENSITIVE TO ABA1 | AT1G72770 (7.10E-70) | | PH01001362G0300 | SIT4 phosphatase-associated family protein | AT1G30470 (0.00E+00) | | PH01001468G0430 | CTC-interacting domain 4 | AT3G14010 (1.30E-67) | | PH01001894G0060 | pyridoxin (pyrodoxamine) 5-phosphate oxidase | AT5G49970 (0.00E+00) | | PH01002938G0010 | Rubber elongation factor protein (REF) | AT3G05500 (8.50E-56) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000041 | Oxidative_phosphorylation
respiratory electron transport chain,
mitochondrial inner membrane,
| details | | CFinderM000190 | pyridoxine biosynthetic process,
S-adenosylmethionine_biosynthetic_process
proteolysis,
pyridoxamine-phosphate oxidase activity,
methionine adenosyltransferase activity,
oxidoreductase activity, acting on the CH-NH2 group of donors,
aminopeptidase activity,
serine-type peptidase activity,
FMN binding,
| details | | CFinderM000195 | pyridoxine biosynthetic process,
S-adenosylmethionine_biosynthetic_process
proteolysis,
pyridoxamine-phosphate oxidase activity,
oxidoreductase activity, acting on the CH-NH2 group of donors,
methionine adenosyltransferase activity,
Endocytosis
aminopeptidase activity,
| details | | CFinderM000296 | aspartic-type endopeptidase activity,
proteolysis,
drug transmembrane transport,
drug transmembrane transporter activity,
antiporter activity,
| details | | CFinderM000360 | protein arginylation,
arginyltransferase activity,
RNA_degradation
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000481 | proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
SNF2 Transcription_Regulator(from iTAK)
Phagosome
Oxidative_phosphorylation
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
RB Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
clathrin coat of trans-Golgi network vesicle,
clathrin coat of coated pit,
mediator complex,
PHD Transcription_Regulator(from iTAK)
| details | | CFinderM000864 | mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
Endocytosis
| details | | CFinderM000937 | | details | | CFinderM000990 | MBF1 Transcription_Regulator(from iTAK)
RNA_degradation
| details | | CFinderM001090 | GT14 GlycosylTransferases
proteolysis,
membrane,
aminopeptidase activity,
| details | | CFinderM001140 | RB Transcription_Regulator(from iTAK)
nucleus,
regulation_of_cell_cycle
SNF2 Transcription_Regulator(from iTAK)
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
| details | | CFinderM001235 | ubiquitin ligase complex,
protein ubiquitination,
binding,
Ubiquitin_mediated_proteolysis
RNA_degradation
| details | | CFinderM001374 | Others Transcription_Regulator(from iTAK)
| details |
4.Expression profilings |
