CFinderM000357's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
RNA_degradation0.026934402KEGG
steroid biosynthetic process,0.033283884GO:0006694
S-adenosylmethionine-dependent methyltransferase activity,0.043917361GO:0008757

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000035G1950-- (-)
PH01000149G1400-- (-)
PH01000390G0610sterol methyltransferase 2AT1G20330 (2.00E-127)
PH01000391G0220SIT4 phosphatase-associated family proteinAT1G30470 (2.00E-116)
PH01000775G0130Protein kinase family proteinAT3G03940 (0.00E+00)
PH01001859G0270Phototropic-responsive NPH3 family proteinAT5G66560 (4.30E-91)
PH01002348G0040Galactose oxidase/kelch repeat superfamily proteinAT5G42350 (4.30E-79)
PH01006233G0050Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domainAT2G32415 (2.00E-160)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000202peroxiredoxin activity,
antioxidant activity,
RNA_degradation
GRAS Transcription_Regulator(from PlantTFDB)
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details
CFinderM000355OFP Transcription_Regulator(from iTAK)
electron transport chain,
RNA_degradation
Photosynthesis
details
CFinderM000509Whirly Transcription_Regulator(from PlantTFDB)
protochlorophyllide reductase activity,
Photosynthesis
Porphyrin_and_chlorophyll_metabolism
photosystem II,
oxygen evolving complex,
RNA_degradation
details
CFinderM000510Porphyrin_and_chlorophyll_metabolism
protochlorophyllide reductase activity,
glutamate-1-semialdehyde 2,1-aminomutase activity,
tetrapyrrole biosynthetic process,
sodium ion transport,
RNA_degradation
details
CFinderM000775Ribosome
iron_ion_transmembrane_transport
translation,
iron ion transmembrane transporter activity,
structural constituent of ribosome,
intracellular,
RNA_degradation
details
CFinderM000878Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
Phagosome
details
CFinderM000894regulation of ARF protein signal transduction,
phospholipid transport,
proton-transporting V-type ATPase, V0 domain,
ATP hydrolysis coupled proton transport,
details
CFinderM000936NAD biosynthetic process,
phospholipid transport,
nicotinate-nucleotide diphosphorylase (carboxylating) activity,
nicotinate phosphoribosyltransferase activity,
phospholipid-translocating ATPase activity,
details
CFinderM000982RNA_degradation
folic acid-containing compound biosynthetic process,
methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity
cullin-RING ubiquitin ligase complex,
details
CFinderM001222aminoacylase activity,
RNA_degradation
details
CFinderM001489Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
RNA_degradation
details
CFinderM001576RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
details
CFinderM001813GT48 GlycosylTransferases
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
1,3-beta-D-glucan synthase complex,
S-adenosylmethionine-dependent methyltransferase activity,
cytochrome-c oxidase activity,
steroid biosynthetic process,
(1->3)-beta-D-glucan biosynthetic process,
metabolic process,
RNA_degradation
Oxidative_phosphorylation
cellular metabolic process,
details
CFinderM001864GH63 Glycoside_Hydrolases
oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
oxygen evolving complex,
photosystem II,
extrinsic to membrane,
Photosynthesis
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples012345leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000035G1950PH01000149G1400PH01000390G0610PH01000391G0220PH01000775G0130PH01001859G0270PH01002348G0040PH01006233G0050Highcharts.com