CFinderM000402's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
spliceosomal complex,0.004803934GO:0005681
nuclear mRNA splicing, via spliceosome,0.007198474GO:0000398
GRAS Transcription_Regulator(from PlantTFDB)0.01958258GFam
protein binding,0.021733005GO:0005515
Spliceosome0.041262912KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000096G0240RING/U-box superfamily proteinAT4G03000 (1.50E-55)
PH01000097G0900F-box family proteinAT4G33210 (0.00E+00)
PH01000180G1130nucleoporin-relatedAT5G20200 (5.50E-11)
PH01000213G0510F-box family proteinAT4G33210 (0.00E+00)
PH01000740G0570Pre-mRNA-processing-splicing factorAT1G80070 (0.00E+00)
PH01001278G0250-- (-)
PH01001761G0380GRAS family transcription factorAT2G37650 (1.00E-162)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000346GH38 Glycoside_Hydrolases
protein-chromophore linkage,
leucyl-tRNA aminoacylation,
detection_of_visible_light
mannose metabolic process,
ABC_transporters
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
Aminoacyl-tRNA_biosynthesis
spliceosomal complex,
leucine-tRNA ligase activity,
mannosidase activity,
aminoacyl-tRNA_editing_activity
alpha-mannosidase activity,
nuclear mRNA splicing, via spliceosome,
details
CFinderM000403GRAS Transcription_Regulator(from PlantTFDB)
details
CFinderM000496cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
details
CFinderM000641nucleotide-excision repair,
Nucleotide_excision_repair
single-stranded DNA binding,
protein binding,
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000823ABC_transporters
details
CFinderM001144cullin-RING ubiquitin ligase complex,
details
CFinderM001322ubiquitin ligase complex,
protein ubiquitination,
DNA_replication
protein binding,
details
CFinderM001445Nucleotide_excision_repair
nucleotide-excision repair,
endonuclease activity,
nuclease activity,
single-stranded DNA binding,
protein binding,
DNA repair,
protein ubiquitination,
details

4.Expression profilings