CFinderM000439's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
polygalacturonase activity,0.004679741GO:0004650
nucleosome assembly,0.043621375GO:0006334

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000098G0020-- (-)
PH01000165G0920Pectin lyase-like superfamily proteinAT1G80170 (6.60E-36)
PH01000243G0860-- (-)
PH01000440G0540nucleosome assembly protein 1;2AT2G19480 (3.00E-108)
PH01000564G0240-AT4G26450 (8.80E-16)
PH01010620G0010Plant protein of unknown function (DUF828)AT5G51640 (4.80E-48)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000006CAMK_CDPK (from iTAK)
transporter activity,
transport,
transmembrane transport,
polygalacturonase activity,
details
CFinderM000227Valine,_leucine_and_isoleucine_biosynthesis
COPII_vesicle_coating
intracellular,
translational elongation,
details
CFinderM000295translation,
AGC_RSK-2 (from iTAK)
CMGC_GSK (from iTAK)
Ribosome
intracellular,
protein phosphorylation,
details
CFinderM000558Whirly Transcription_Regulator(from PlantTFDB)
COPII_vesicle_coating
aminoacyl-tRNA hydrolase activity,
intracellular,
details
CFinderM000754Ribosome
outer membrane,
proteasome core complex, alpha-subunit complex,
structural constituent of ribosome,
threonine-type endopeptidase activity,
endopeptidase activity,
translation,
intracellular,
proteasome core complex,
Proteasome
proteolysis involved in cellular protein catabolic process,
details
CFinderM001171COPII_vesicle_coating
details
CFinderM001206Riboflavin_metabolism
riboflavin kinase activity,
riboflavin biosynthetic process,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome assembly,
details
CFinderM001583endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001597Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Phagosome
cellular protein metabolic process,
C3H Transcription_Regulator(from PlantTFDB)
membrane,
details
CFinderM001802Alanine,_aspartate_and_glutamate_metabolism
cell wall biogenesis,
purine nucleotide biosynthetic process,
galactoside 2-alpha-L-fucosyltransferase activity,
adenylosuccinate synthase activity,
WRKY Transcription_Regulator(from PlantTFDB)
RNA-dependent DNA replication,
Purine_metabolism
nucleosome assembly,
details

4.Expression profilings