CFinderM000453's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
carbon fixation,0.010722071GO:0015977
response to wounding,0.010722071GO:0009611
Lysine_degradation0.024702289KEGG
SET Transcription_Regulator(from iTAK)0.038338779GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000042G1590-- (-)
PH01000087G0770-- (-)
PH01000184G0600-- (-)
PH01000252G0230Serine protease inhibitor, potato inhibitor I-type family proteinAT2G38870 (1.10E-08)
PH01000460G0100-- (-)
PH01000463G0920-- (-)
PH01000540G0630-- (-)
PH01001228G0130-- (-)
PH01001296G0430-- (-)
PH01001351G0360-- (-)
PH01001780G0480SET domain protein 25AT5G42400 (1.70E-63)
PH01001858G0110-- (-)
PH01002069G0330-- (-)
PH01002425G0210-- (-)
PH01002587G0010Trimeric LpxA-like enzymeAT4G18300 (1.60E-11)
PH01002604G0230-- (-)
PH01002633G0280-- (-)
PH01002684G0230-- (-)
PH01002755G0190-- (-)
PH01003373G0050-- (-)
PH01003505G0200Protein of unknown function (DUF1682)AT4G24330 (6.00E-117)
PH01009244G0010-- (-)
PH01013179G0010ribulose-bisphosphate carboxylasesATCG00490 (0.00E+00)
PH01063137G0010AMP-dependent synthetase and ligase family proteinAT2G04350 (2.80E-29)
PH01155481G0010-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000170cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
ubiquitin-dependent protein catabolic process,
details
CFinderM000229GT2 GlycosylTransferases
NuA4_histone_acetyltransferase_complex
histone_H2A_acetylation
protein homooligomerization,
histone_H4_acetylation
chromatin remodeling,
negative_regulation_of_transcription,_DNA-templated
RNA modification,
pseudouridine synthesis,
details
CFinderM000380details
CFinderM000389protein folding,
response to heat,
unfolded protein binding,
details
CFinderM000501oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
Peroxisome
N-Glycan_biosynthesis
details
CFinderM000540condensin_complex
CK1_CK1 (from iTAK)
mitotic_chromosome_condensation
details
CFinderM000627DNA primase activity,
DNA_replication
details
CFinderM000715proton-transporting two-sector ATPase complex, catalytic domain,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
transferase activity,
ubiquitin thiolesterase activity,
ATP hydrolysis coupled proton transport,
details
CFinderM000723details
CFinderM000734WASH_complex
cytoskeleton,
phagocytosis,
malate metabolic process,
cellular carbohydrate metabolic process,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
details
CFinderM001015DNA primase activity,
details
CFinderM001046details
CFinderM001203SNARE_interactions_in_vesicular_transport
ubiquitin-dependent protein catabolic process,
details
CFinderM001242mitotic_spindle_assembly_checkpoint
WASH_complex
PHD Transcription_Regulator(from iTAK)
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
details
CFinderM001248DNA primase activity,
details
CFinderM001253CMGC_CLK (from iTAK)
membrane,
details
CFinderM001261thymidylate synthase activity,
dihydrofolate reductase activity,
dTMP biosynthetic process,
ribosome biogenesis,
nucleotidyltransferase activity,
details
CFinderM001360cysteine-type peptidase activity,
galactosyltransferase activity,
protein glycosylation,
details
CFinderM001424WASH_complex
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
Peroxisome
details
CFinderM001448proton-transporting two-sector ATPase complex, catalytic domain,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
ATP hydrolysis coupled proton transport,
details
CFinderM001581WASH_complex
DNA_ligation_involved_in_DNA_repair
drug_binding
DNA_ligase_activity
DNA ligase (ATP) activity,
DNA recombination,
DNA repair,
details
CFinderM001799Various_types_of_N-glycan_biosynthesis
Base_excision_repair
N-Glycan_biosynthesis
nuclease activity,
endonuclease activity,
NAC Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings


Show details about module gene expression profiling