|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | exosome_(RNase_complex) | 0.004687793 | GO:0000178 | | RNA_degradation | 0.020270217 | KEGG |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000069 | Ribosome_biogenesis_in_eukaryotes
Ino80_complex
ATP-dependent_5'-3'_DNA_helicase_activity
rRNA (adenine-N6,N6-)-dimethyltransferase activity,
rRNA methyltransferase activity,
rRNA (adenine) methyltransferase activity,
snoRNA binding,
snRNA_pseudouridine_synthesis
rRNA modification,
| details | | CFinderM000196 | SCY1_SCYL2 (from iTAK)
phosphatidylinositol phosphorylation,
ubiquitin ligase complex,
protein ubiquitination,
binding,
| details | | CFinderM000204 | CMGC_CLK (from iTAK)
histone deacetylation,
ubiquitin ligase complex,
histone deacetylase activity,
| details | | CFinderM000299 | nucleus,
B3-ARF Transcription_Regulator(from iTAK)
RLK-Pelle_Extensin (from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
GRF Transcription_Regulator(from PlantTFDB)
AGC_RSK-2 (from iTAK)
regulation of transcription, DNA-dependent,
Nucleotide_excision_repair
DNA_replication
Mismatch_repair
Homologous_recombination
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
response to hormone stimulus,
DNA metabolic process,
| details | | CFinderM000341 | exosome_(RNase_complex)
COP9_signalosome
| details | | CFinderM000457 | SCY1_SCYL2 (from iTAK)
| details | | CFinderM000470 | SCY1_SCYL2 (from iTAK)
| details | | CFinderM000577 | COP9_signalosome
exosome_(RNase_complex)
cell communication,
RNA_degradation
phosphatidylinositol binding,
| details | | CFinderM000655 | cell communication,
| details | | CFinderM000692 | CMGC_CLK (from iTAK)
ornithine_metabolic_process
histone deacetylation,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
| details | | CFinderM000696 | snRNA_pseudouridine_synthesis
snoRNA binding,
ribosome biogenesis,
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000806 | Ribosome
translation,
intracellular,
structural constituent of ribosome,
5S rRNA binding,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
| details | | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK)
NEK (from iTAK)
chromatin silencing at telomere,
chromatin modification,
histone acetylation,
| details | | CFinderM001105 | Endocytosis
pseudouridine synthesis,
RNA modification,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
pseudouridine synthase activity,
| details | | CFinderM001166 | DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
| details | | CFinderM001243 | regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Drug_metabolism_-_cytochrome_P450
Glutathione_metabolism
protein_kinase_binding
NAD+ ADP-ribosyltransferase activity,
| details | | CFinderM001493 | ARID Transcription_Regulator(from iTAK)
magnesium_ion_transport
magnesium_ion_transmembrane_transporter_activity
| details | | CFinderM001547 | CMGC_CLK (from iTAK)
exosome_(RNase_complex)
cell communication,
RNA_degradation
| details | | CFinderM001831 | | details | | CFinderM001832 | histone deacetylation,
Endocytosis
histone deacetylase activity,
cellular protein metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
NAD+ ADP-ribosyltransferase activity,
| details | | CFinderM001850 | lipid metabolic process,
| details | | CFinderM001875 | histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
| details |
4.Expression profilings |
