|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | SNF2 Transcription_Regulator(from iTAK) | 0.015210958 | GFam | | proteasomal ubiquitin-dependent protein catabolic process, | 0.01561548 | GO:0043161 | | nucleotide-excision repair, | 0.025077051 | GO:0006289 | | ribosome biogenesis, | 0.025077051 | GO:0042254 | | eukaryotic translation initiation factor 3 complex, | 0.042678266 | GO:0005852 | | nucleolus, | 0.042678266 | GO:0005730 | | helicase activity, | 0.044144461 | GO:0004386 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000095G1010 | RNA helicase, ATP-dependent, SK12/DOB1 protein | AT2G06990 (0.00E+00) | | PH01000265G0190 | Pentatricopeptide repeat (PPR) superfamily protein | AT5G64320 (1.30E-39) | | PH01000393G0130 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT4G19220 (4.00E-168) | | PH01000426G0150 | pescadillo-related | AT5G14520 (0.00E+00) | | PH01000541G0540 | eukaryotic translation initiation factor 3E | AT3G57290 (3.00E-174) | | PH01000629G0150 | SNF2 domain-containing protein / helicase domain-containing protein | AT2G16390 (0.00E+00) | | PH01001011G0440 | Rad23 UV excision repair protein family | AT5G38470 (1.10E-98) | | PH01002177G0070 | ubiquitin-conjugating enzyme 35 | AT1G78870 (3.40E-58) | | PH01003285G0110 | Uncharacterized protein family (UPF0016) | AT5G36290 (1.30E-43) | | PH01004749G0020 | NB-ARC domain-containing disease resistance protein | AT3G14470 (5.40E-65) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000944 | TKL-Pl-6 (from iTAK)
Ubiquitin_mediated_proteolysis
| details | | CFinderM001272 | | details | | CFinderM001444 | nucleolus,
SNARE_interactions_in_vesicular_transport
Homologous_recombination
SOS_response
DNA metabolic process,
ribosome biogenesis,
single-stranded DNA binding,
DNA-dependent ATPase activity,
| details | | CFinderM001451 | Protein_processing_in_endoplasmic_reticulum
Protein_export
mitosis,
protein retention in ER lumen,
ER retention sequence binding,
spliceosomal complex,
glycerol ether metabolic process,
isomerase activity,
| details | | CFinderM001492 | mitochondrial inner membrane,
mitochondrial inner membrane presequence translocase complex,
nucleolus,
Ubiquitin_mediated_proteolysis
ribosome biogenesis,
| details | | CFinderM001522 | SNF2 Transcription_Regulator(from iTAK)
nucleolus,
nuclear pore,
RNA_transport
| details | | CFinderM001554 | protein retention in ER lumen,
ER retention sequence binding,
peptidyl-prolyl cis-trans isomerase activity,
acid-amino acid ligase activity,
| details | | CFinderM001555 | protein retention in ER lumen,
RLK-Pelle_DLSV (from iTAK)
ER retention sequence binding,
| details | | CFinderM001678 | mRNA_cleavage_and_polyadenylation_specificity_factor_complex
mRNA cleavage,
protein retention in ER lumen,
mRNA_polyadenylation
RNA metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
ER retention sequence binding,
| details | | CFinderM001702 | ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
| details | | CFinderM001739 | mannose biosynthetic process,
phosphomannomutase activity,
ARF Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
| details |
4.Expression profilings |
