CFinderM000496's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
cullin-RING ubiquitin ligase complex,5.78E-06GO:0031461
ubiquitin protein ligase binding,7.96E-05GO:0031625
Pseudo ARR-B Transcription_Regulator(from iTAK)0.005050022GFam
ubiquitin-dependent protein catabolic process,0.00791278GO:0006511
diphosphomevalonate decarboxylase activity,0.023235119GO:0004163
L,L-diaminopimelate_aminotransferase_activity0.023235119GO:0010285
Citrate_cycle_(TCA_cycle)0.026113347KEGG
Pyruvate_metabolism0.027779011KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000000G6760SPT2 chromatin proteinAT2G22720 (3.70E-30)
PH01000013G1960RP non-ATPase subunit 8AAT5G05780 (8.00E-162)
PH01000019G1090Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2AT5G24680 (7.80E-93)
PH01000033G1580Transducin/WD40 repeat-like superfamily proteinAT3G45620 (2.00E-147)
PH01000052G1320-- (-)
PH01000072G1020TRAF-like superfamily proteinAT5G43560 (2.00E-118)
PH01000081G1110evolutionarily conserved C-terminal region 2AT3G13460 (9.00E-116)
PH01000097G0900F-box family proteinAT4G33210 (0.00E+00)
PH01000109G0110TRAF-like superfamily proteinAT1G04300 (2.00E-116)
PH01000144G1250GHMP kinase family proteinAT3G54250 (7.00E-155)
PH01000180G1130nucleoporin-relatedAT5G20200 (5.50E-11)
PH01000191G0360IBR domain-containing proteinAT1G65430 (1.00E-109)
PH01000232G0190Tudor/PWWP/MBT superfamily proteinAT3G09670 (2.80E-41)
PH01000258G0100cullin 1AT4G02570 (1.00E-123)
PH01000258G0120cullin 1AT4G02570 (9.00E-28)
PH01000305G1060Lactate/malate dehydrogenase family proteinAT5G43330 (9.00E-155)
PH01000384G0310-- (-)
PH01000561G0670DNA-binding bromodomain-containing proteinAT5G46550 (1.50E-33)
PH01000574G0140Protein of unknown function (DUF3411)AT5G24690 (5.00E-131)
PH01000754G0120-- (-)
PH01000789G0720sensitive to freezing 6AT4G04920 (0.00E+00)
PH01001377G0330global transcription factor CAT4G10710 (0.00E+00)
PH01001587G0070Pyridoxal phosphate (PLP)-dependent transferases superfamily proteinAT4G33680 (7.00E-177)
PH01001592G0400cullin 1AT4G02570 (2.80E-87)
PH01001908G0090pyruvate dehydrogenase E1 betaAT1G30120 (5.00E-167)
PH01002500G0060-- (-)
PH01003405G0130Tudor/PWWP/MBT superfamily proteinAT1G51745 (3.00E-23)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000273Lysine_biosynthesis
L,L-diaminopimelate_aminotransferase_activity
lysine biosynthetic process via diaminopimelate,
RLK-Pelle_LRR-Xb-1 (from iTAK)
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM000402spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
GRAS Transcription_Regulator(from PlantTFDB)
protein binding,
Spliceosome
details
CFinderM000403GRAS Transcription_Regulator(from PlantTFDB)
details
CFinderM000486details
CFinderM000593nicotinate nucleotide salvage,
diphosphomevalonate decarboxylase activity,
nicotinate phosphoribosyltransferase activity,
nicotinate-nucleotide diphosphorylase (carboxylating) activity,
NAD biosynthetic process,
Nicotinate_and_nicotinamide_metabolism
isoprenoid biosynthetic process,
Terpenoid_backbone_biosynthesis
large ribosomal subunit,
details
CFinderM000641nucleotide-excision repair,
Nucleotide_excision_repair
single-stranded DNA binding,
protein binding,
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000822protein binding,
Proteasome
details
CFinderM000823ABC_transporters
details
CFinderM001040proteasomal ubiquitin-dependent protein catabolic process,
nucleotide-excision repair,
chloride transport,
damaged DNA binding,
ion channel activity,
voltage-gated chloride channel activity,
Nucleotide_excision_repair
details
CFinderM001144cullin-RING ubiquitin ligase complex,
details
CFinderM001322ubiquitin ligase complex,
protein ubiquitination,
DNA_replication
protein binding,
details
CFinderM001391Lysine_biosynthesis
L,L-diaminopimelate_aminotransferase_activity
C3H Transcription_Regulator(from PlantTFDB)
lysine biosynthetic process via diaminopimelate,
details
CFinderM001419nucleocytoplasmic transport,
GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
intracellular protein transport,
cellular carbohydrate metabolic process,
malate metabolic process,
GTPase activity,
GTP binding,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
intracellular,
Pyruvate_metabolism
Carbon_fixation_in_photosynthetic_organisms
Glyoxylate_and_dicarboxylate_metabolism
Citrate_cycle_(TCA_cycle)
membrane,
details
CFinderM001445Nucleotide_excision_repair
nucleotide-excision repair,
endonuclease activity,
nuclease activity,
single-stranded DNA binding,
protein binding,
DNA repair,
protein ubiquitination,
details
CFinderM001481details
CFinderM001524diphosphomevalonate decarboxylase activity,
Peroxisome
6-phosphofructokinase complex,
Terpenoid_backbone_biosynthesis
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
6-phosphofructokinase activity,
GRAS Transcription_Regulator(from PlantTFDB)
isoprenoid biosynthetic process,
glycolysis,
details
CFinderM001637protein binding,
small GTPase mediated signal transduction,
details
CFinderM001723Proteasome
proteolysis involved in cellular protein catabolic process,
protein catabolic process,
proteasome core complex,
mRNA_surveillance_pathway
details
CFinderM001834phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM001840transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
details

4.Expression profilings


Show details about module gene expression profiling