|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Whirly Transcription_Regulator(from PlantTFDB) | 0.001124982 | GFam | | protochlorophyllide reductase activity, | 0.013612287 | GO:0016630 | | Photosynthesis | 0.030290945 | KEGG | | Porphyrin_and_chlorophyll_metabolism | 0.030290945 | KEGG | | photosystem II, | 0.030385059 | GO:0009523 | | oxygen evolving complex, | 0.030385059 | GO:0009654 | | RNA_degradation | 0.037162064 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000507G0150 | dicarboxylate transport 2.1 | AT5G64290 (5.80E-74) | | PH01000789G0260 | protochlorophyllide oxidoreductase B | AT4G27440 (1.00E-166) | | PH01001081G0030 | photosystem II reaction center PSB28 protein | AT4G28660 (2.30E-51) | | PH01001710G0260 | NAD(P)-binding Rossmann-fold superfamily protein | AT5G18660 (1.00E-111) | | PH01002537G0110 | ssDNA-binding transcriptional regulator | AT2G02740 (1.50E-72) | | PH01006233G0050 | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | AT2G32415 (2.00E-160) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000202 | peroxiredoxin activity,
antioxidant activity,
RNA_degradation
GRAS Transcription_Regulator(from PlantTFDB)
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM000355 | OFP Transcription_Regulator(from iTAK)
electron transport chain,
RNA_degradation
Photosynthesis
| details | | CFinderM000357 | RNA_degradation
steroid biosynthetic process,
S-adenosylmethionine-dependent methyltransferase activity,
| details | | CFinderM000510 | Porphyrin_and_chlorophyll_metabolism
protochlorophyllide reductase activity,
glutamate-1-semialdehyde 2,1-aminomutase activity,
tetrapyrrole biosynthetic process,
sodium ion transport,
RNA_degradation
| details | | CFinderM000686 | Photosynthesis
Biosynthesis_of_unsaturated_fatty_acids
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water,
intracellular,
photosystem II,
oxygen evolving complex,
| details | | CFinderM000775 | Ribosome
iron_ion_transmembrane_transport
translation,
iron ion transmembrane transporter activity,
structural constituent of ribosome,
intracellular,
RNA_degradation
| details | | CFinderM000914 | tetrapyrrole biosynthetic process,
glutamate-1-semialdehyde 2,1-aminomutase activity,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM000982 | RNA_degradation
folic acid-containing compound biosynthetic process,
methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity
cullin-RING ubiquitin ligase complex,
| details | | CFinderM001222 | aminoacylase activity,
RNA_degradation
| details | | CFinderM001449 | WNK_NRBP (from iTAK)
CAMK_CAMKL-CHK1 (from iTAK)
| details | | CFinderM001489 | Steroid_hormone_biosynthesis
Fatty_acid_elongation
Biosynthesis_of_unsaturated_fatty_acids
RNA_degradation
| details | | CFinderM001576 | RNA_degradation
photosystem II,
extrinsic to membrane,
oxygen evolving complex,
| details | | CFinderM001813 | GT48 GlycosylTransferases
mitochondrial respiratory chain complex IV,
mitochondrial inner membrane,
1,3-beta-D-glucan synthase complex,
S-adenosylmethionine-dependent methyltransferase activity,
cytochrome-c oxidase activity,
steroid biosynthetic process,
(1->3)-beta-D-glucan biosynthetic process,
metabolic process,
RNA_degradation
Oxidative_phosphorylation
cellular metabolic process,
| details | | CFinderM001864 | GH63 Glycoside_Hydrolases
oligosaccharide metabolic process,
mannosyl-oligosaccharide glucosidase activity,
oxygen evolving complex,
photosystem II,
extrinsic to membrane,
Photosynthesis
| details |
4.Expression profilings |
