CFinderM000536's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SET Transcription_Regulator(from iTAK)0.032595302GFam
Others Transcription_Regulator(from iTAK)0.032595302GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000158G1460GRAM domain family proteinAT2G22475 (2.70E-61)
PH01000260G0320endoplasmatic reticulum retrieval protein 1BAT2G21600 (8.90E-65)
PH01000385G0640-AT5G02520 (2.90E-15)
PH01000501G0350Protein of unknown function (DUF962)AT1G18720 (1.80E-34)
PH01000536G0040-- (-)
PH01000537G0860Rho GTPase activation protein (RhoGAP) with PH domainAT4G24580 (3.40E-58)
PH01000537G0870Rho GTPase activation protein (RhoGAP) with PH domainAT4G24580 (4.10E-34)
PH01001227G0270-- (-)
PH01001510G0110-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000384RNA_transport
transport,
nuclear pore,
details
CFinderM000527Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
details
CFinderM000573fatty-acyl-CoA binding,
Others Transcription_Regulator(from iTAK)
signal transduction,
details
CFinderM000574Others Transcription_Regulator(from iTAK)
signal transduction,
details
CFinderM000638Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
B3 Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM000645SET Transcription_Regulator(from iTAK)
details
CFinderM000671SET Transcription_Regulator(from iTAK)
DNA repair,
Base_excision_repair
nuclease activity,
Ubiquitin_mediated_proteolysis
details
CFinderM000887SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
transcription initiation, DNA-dependent,
details
CFinderM000918GT48 GlycosylTransferases
RLK-Pelle_RLCK-V (from iTAK)
TKL-Pl-4 (from iTAK)
microtubule cytoskeleton organization,
(1->3)-beta-D-glucan biosynthetic process,
cytokinesis
1,3-beta-D-glucan synthase complex,
mRNA_surveillance_pathway
details
CFinderM000953fatty-acyl-CoA binding,
details
CFinderM001341RLK-Pelle_LRR-II (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
microtubule associated complex,
protein phosphorylation,
microtubule-based movement,
details
CFinderM001350HB-other Transcription_Regulator(from PlantTFDB)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
transcription initiation, DNA-dependent,
details
CFinderM001399RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
details
CFinderM001537vacuolar proton-transporting V-type ATPase, V1 domain,
ATP hydrolysis coupled proton transport,
MYB_related Transcription_Regulator(from PlantTFDB)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001752spindle pole,
microtubule organizing center,
STE_STE11 (from iTAK)
microtubule cytoskeleton organization,
mRNA_surveillance_pathway
details

4.Expression profilings


Show details about module gene expression profiling