CFinderM000538's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
GT61 GlycosylTransferases0.020785549GFam
RLK-Pelle_PERK-1 (from iTAK)0.020785549GFam
GT47 GlycosylTransferases0.027648379GFam
Aminoacyl-tRNA_biosynthesis0.036238984KEGG
threonyl-tRNA aminoacylation,0.046468965GO:0006435
response to oxidative stress,0.046468965GO:0006979
histidine_catabolic_process_to_glutamate_and_formamide0.046468965GO:0019556

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000053G1520exostosin family proteinAT3G45400 (2.00E-150)
PH01000058G0470Amidohydrolase familyAT3G55850 (3.90E-46)
PH01000125G0950PHYTOENE SYNTHASEAT5G17230 (6.00E-138)
PH01000255G1100Mitochondrial transcription termination factor family proteinAT4G14605 (1.00E-118)
PH01000364G0120GTP1/OBG family proteinAT5G18570 (1.00E-173)
PH01000384G0460T-complex protein 11AT1G22930 (0.00E+00)
PH01000589G0730roline-rich extensin-like receptor kinase 4AT2G18470 (9.00E-148)
PH01000668G0830T-complex protein 1 alpha subunitAT3G20050 (0.00E+00)
PH01000719G0680GDSL-like Lipase/Acylhydrolase superfamily proteinAT5G45910 (1.20E-47)
PH01000819G0010Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein familyAT3G44220 (3.10E-43)
PH01001151G0370Tetratricopeptide repeat (TPR)-like superfamily proteinAT1G15290 (7.00E-150)
PH01001248G0150Threonyl-tRNA synthetaseAT5G26830 (0.00E+00)
PH01001322G0240Glycosyltransferase family 61 proteinAT3G18170 (7.30E-91)
PH01001596G0090crooked neck protein, putative / cell cycle protein, putativeAT5G41770 (1.60E-46)
PH01001619G0160Vacuolar sorting protein 9 (VPS9) domainAT5G09320 (3.80E-43)
PH01002030G0040-- (-)
PH01005048G0010Peroxidase superfamily proteinAT4G33420 (1.20E-39)
PH01005048G0020-- (-)
PH01007504G0010DNAJ heat shock N-terminal domain-containing proteinAT1G21080 (4.00E-138)
PH01203715G0010CLPC homologue 1AT5G50920 (2.10E-91)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000285ABC_transporters
details
CFinderM000408Group-Pl-3 (from iTAK)
histidine_catabolic_process_to_glutamate_and_formamide
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides,
details
CFinderM000447CMGC_MAPK (from iTAK)
C3H Transcription_Regulator(from PlantTFDB)
ubiquitin ligase complex,
extracellular region,
details
CFinderM000477Valine,_leucine_and_isoleucine_degradation
ZF-HD Transcription_Regulator(from PlantTFDB)
Cyanoamino_acid_metabolism
oxidoreductase activity, acting on the CH-CH group of donors,
acyl-CoA dehydrogenase activity,
Rab GTPase activator activity,
Phenylpropanoid_biosynthesis
regulation of Rab GTPase activity,
details
CFinderM000644NAC Transcription_Regulator(from PlantTFDB)
regulation of transcription, DNA-dependent,
Trihelix Transcription_Regulator(from PlantTFDB)
details
CFinderM000797threonyl-tRNA aminoacylation,
tRNA aminoacylation,
microtubule cytoskeleton organization,
cytokinesis
Aminoacyl-tRNA_biosynthesis
Ribosome_biogenesis_in_eukaryotes
threonine-tRNA ligase activity,
cellular amino acid metabolic process,
tRNA aminoacylation for protein translation,
ligase activity, forming aminoacyl-tRNA and related compounds,
microtubule binding,
details
CFinderM001004IWS1 Transcription_Regulator(from iTAK)
heme_a_biosynthetic_process
threonyl-tRNA aminoacylation,
tRNA aminoacylation,
threonine-tRNA ligase activity,
Aminoacyl-tRNA_biosynthesis
Porphyrin_and_chlorophyll_metabolism
ligase activity, forming aminoacyl-tRNA and related compounds,
oxidoreductase activity, acting on the CH-CH group of donors,
Oxidative_phosphorylation
nucleotide binding,
tRNA aminoacylation for protein translation,
details
CFinderM001044details
CFinderM001118Aminoacyl-tRNA_biosynthesis
threonyl-tRNA aminoacylation,
HSF Transcription_Regulator(from PlantTFDB)
threonine-tRNA ligase activity,
tRNA aminoacylation,
C2H2 Transcription_Regulator(from PlantTFDB)
ligase activity, forming aminoacyl-tRNA and related compounds,
tRNA aminoacylation for protein translation,
cellular protein metabolic process,
details
CFinderM001198RLK-Pelle_RLCK-VI (from iTAK)
Oxidative_phosphorylation
details
CFinderM001464MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RNA processing,
details
CFinderM001744Ribosome_biogenesis_in_eukaryotes
Aminoacyl-tRNA_biosynthesis
threonyl-tRNA aminoacylation,
threonine-tRNA ligase activity,
tRNA aminoacylation,
tRNA aminoacylation for protein translation,
cellular protein metabolic process,
RNA processing,
ligase activity, forming aminoacyl-tRNA and related compounds,
details
CFinderM001767RLK-Pelle_PERK-1 (from iTAK)
RNA methylation,
nucleoside transmembrane transporter activity,
carboxyl- or carbamoyltransferase activity,
RNA methyltransferase activity,
O-methyltransferase activity,
RNA_transport
cellular amino acid metabolic process,
amino acid binding,
details
CFinderM001884single-stranded DNA binding,
DNA_replication
RNA processing,
details

4.Expression profilings


Show details about module gene expression profiling